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TARA_Y100000590; TARA_20110808T1733Z_125_EVENT_PUMP_P_S_(5 m)_GIRUS_NUC-dry_W0.22-0.45_TARA_Y100000590

Identifiers
BioSample: SAMN07286236; Sample name: Proteobacteria bacterium MarineProteo1_Bin2
Organism
Proteobacteria bacterium MarineProteo1_Bin2
cellular organisms; Bacteria; Pseudomonadota; unclassified Pseudomonadota
Package
Microbe; version 1.0
Attributes
isolation sourcesaline water including plankton
collection date2011-08-08
geographic locationPacific Ocean: South Pacific Ocean
latitude and longitude8.9111 N 142.5571 E
isolateMarineProteo1_Bin2
depth5 m
sample typemetagenomic assembly
metagenome sourcemarine metagenome
temperature26.780158
broad-scale environmental contextmarine biome (ENVO:00000447)
collected byTara Oceans
noteThis BioSample is a metagenomic assembly obtained from the marine metagenome BioSample: SAMEA2622822.
environmental_sampleTRUE
metagenomicTRUE
Description

This sample (TARA_Y100000590) was collected during the Tara Oceans expedition (2009-2013) at station TARA_125 (latitudeN=-8.9111, longitudeE=-142.5571) on date/time=2011-08-08T17:33, using a PUMP (High Volume Peristaltic Pump). The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 3-7 m, targeting a surface water layer (ENVO:00002042) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-0.45 micrometres), and stored at -20 degC for later detection of large DNA virus nucleic acid sequences by pyrosequencing methods, and for later metagenomics analysis.

BioProject
PRJNA390581 marine metagenome
Retrieve all samples from this project

Submission
Uppsala University, Joran Martijn; 2017-06-28
Accession:
SAMN07286236
ID:
7286236

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