Lactobacillus crispatus (ID 290636) - BioProject

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Accession: PRJNA290636 ID: 290636

Lactobacillus crispatus

Lactobacillus crispatus Genome sequencing and assembly

See Genome Information for Lactobacillus crispatus

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This project is a component of the The Vaginal Microbiome: Disease, Genetics and the Environment - Demonstration project for Human Microbiome Project (HMP)

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63 additional projects are components of the The Vaginal Microbiome: Disease, Genetics and the Environment - Demonstration project for Human Microbiome Project (HMP).

69 additional projects are related by organism.

Comparison of Lactobacillus crispatus strains from healthy women and those with bacterial vaginosis

Accession	PRJNA290636
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Lactobacillus crispatus[Taxonomy ID: 47770] Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus crispatus
Publications	Abdelmaksoud AA et al., "Comparison of Lactobacillus crispatus isolates from Lactobacillus-dominated vaginal microbiomes with isolates from microbiomes containing bacterial vaginosis-associated bacteria.", Microbiology (Reading), 2016 Mar;162(3):466-475
Grants	"The Vaginal Microbiome: Disease, Genetics and the Environment" (Grant ID UH2 AI083263, National Institute of Allergy and Infectious Diseases)
Submission	Registration date: 26-Jan-2016 Vaginal Microbiome Consortium - Virginia Commonwealth University
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1882
WGS master	8
Protein Sequences	17230
Publications
PubMed	1
PMC	1
Other datasets
BioSample	8
Assembly	8

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

3
5
8

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_001541405.1	LJGQ00000000	SAMN03893602	VMC4	Lactobacillus crispatus
GCA_001541385.1	LJGP00000000	SAMN03893601	VMC3	Lactobacillus crispatus
GCA_001541505.1	LJOL00000000	SAMN03893604	VMC6	Lactobacillus crispatus
GCA_001541585.1	LJON00000000	SAMN03893606	VMC8	Lactobacillus crispatus
GCA_001541535.1	LJOM00000000	SAMN03893605	VMC7	Lactobacillus crispatus
GCA_001541515.1	LJOK00000000	SAMN03893603	VMC5	Lactobacillus crispatus
GCA_001546025.1	LJDA00000000	SAMN03893600	VMC2	Lactobacillus crispatus
GCA_001546015.1	LJCZ00000000	SAMN03893599	VMC1	Lactobacillus crispatus

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Lactobacillus crispatus

Lactobacillus crispatus Genome sequencing and assembly

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