metagenome (ID 174530) - BioProject

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Accession: PRJNA174530 ID: 174530

metagenome

Multiple body sites from marine mammals, targeted locus (loci) and metagenome shotgun sequencing

The microbial community composition of dolphins and sea lions was characterized using a 16S rRNA gene-based survey of oral, gastric, rectal, and respiratory samples. More...

Accession	PRJNA174530
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	metagenome[Taxonomy ID: 256318] unclassified sequences; metagenomes; metagenome
Publications (total 3) Less...	Dudek NK et al., "Novel Microbial Diversity and Functional Potential in the Marine Mammal Oral Microbiome.", Curr Biol, 2017 Dec 18;27(24):3752-3762.e6 More... Dudek NK et al., "Novel Microbial Diversity and Functional Potential in the Marine Mammal Oral Microbiome.", Curr Biol, 2017 Dec 18;27(24):3752-3762.e6 Bik EM et al., "Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea.", Nat Commun, 2016 Feb 3;7:10516 Published online: Dudek N et al., "Previously uncharacterized rectangular bacterial structures in the dolphin mouth", Nature Communications, 2023;14(1) Less...
Submission	Registration date: 3-Nov-2017 Stanford University School of Medicine
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	15423
WGS master	165
SRA Experiments	474
Protein Sequences	174780
Publications
PubMed	2
PMC	1
Other datasets
BioSample	694
Assembly	165

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

40
125
165

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_002748205.1	PDRR00000000	SAMN07757508	DOLZORAL124_46_9	Acidobacteriota bacterium
GCA_002747255.1	PDUC00000000	SAMN07757424	DOLJORAL78_46_51	Acidobacteriota bacterium
GCA_002748145.1	PDRP00000000	SAMN07757510	DOLZORAL124_47_8_A	Actinomycetales bacterium
GCA_002748155.1	PDRO00000000	SAMN07757511	DOLZORAL124_66_36	Actinomycetales bacterium
GCA_002748195.1	PDRQ00000000	SAMN07757509	DOLZORAL124_53_4	Actinomycetota bacterium
GCA_018456095.2	JAGYHV000000000	SAMN18995133	bin16	Alcaligenaceae bacterium
GCA_002748135.1	PDRN00000000	SAMN07757512	DOLZORAL124_58_16	Alphaproteobacteria bacterium
GCA_002748325.1	PDSD00000000	SAMN07757491	DOLJORAL78_64_11	Arachnia propionica
GCA_018457235.1	JAGYHK000000000	SAMN18995121	bin4	Arcobacter sp.
GCA_002749345.1	PDRM00000000	SAMN07757513	DOLZORAL124_29_21	Arcobacter sp.
GCA_002748095.1	PDRL00000000	SAMN07757516	DOLZORAL124_37_29	Bacteroidales bacterium
GCA_002749075.1	PDTY00000000	SAMN07757432	DOLJORAL78_37_36	Bacteroidia bacterium
GCA_002749065.1	PDTX00000000	SAMN07757434	DOLJORAL78_64_29	Bacteroidia bacterium
GCA_002746855.1	PDRF00000000	SAMN07757529	DOLZORAL124_38_259	Bacteroidia bacterium
GCA_002746825.1	PDRD00000000	SAMN07757533	DOLZORAL124_40_22	Bacteroidia bacterium
GCA_002746875.1	PDRG00000000	SAMN07757528	DOLZORAL124_37_87	Bacteroidia bacterium
GCA_002747995.1	PDRE00000000	SAMN07757530	DOLZORAL124_38_54	Bacteroidia bacterium
GCA_002747225.1	PDUA00000000	SAMN07757430	DOLJORAL78_41_6	Bacteroidota bacterium
GCA_002747205.1	PDTZ00000000	SAMN07757431	DOLJORAL78_47_6	Bacteroidota bacterium
GCA_002748055.1	PDRI00000000	SAMN07757523	DOLZORAL124_51_6	Bacteroidota bacterium
GCA_002748015.1	PDRH00000000	SAMN07757524	DOLZORAL124_57_6	Bacteroidota bacterium
GCA_002748075.1	PDRK00000000	SAMN07757521	DOLZORAL124_36_39	Bacteroidota bacterium
GCA_002748065.1	PDRJ00000000	SAMN07757522	DOLZORAL124_46_22	Bacteroidota bacterium
GCA_002749115.1	PDUB00000000	SAMN07757428	DOLJORAL78_36_69	Bacteroidota bacterium
GCA_018457325.1	JAGYHJ000000000	SAMN18995120	bin3	Campylobacteraceae bacterium
GCA_002747955.1	PDQZ00000000	SAMN07757538	DOLZORAL124_30_42	Candidatus Campbellbacteria bacterium
GCA_002742935.1	PDON00000000	SAMN07757625	DOLZORAL124_31_13	Candidatus Cloacimonadota bacterium
GCA_002742885.1	PDOO00000000	SAMN07757624	DOLZORAL124_36_10	Candidatus Cloacimonadota bacterium
GCA_002747185.1	PDTV00000000	SAMN07757436	DOLJORAL78_50_517	Candidatus Contendobacter odensis
GCA_002748965.1	PDTR00000000	SAMN07757442	DOLJORAL78_31_13	Candidatus Delongbacteria bacterium
GCA_002748705.1	PDSZ00000000	SAMN07757464	DOLJORAL78_48_12	Candidatus Fermentibacteria bacterium
GCA_018457335.1	JAGYHI000000000	SAMN18995119	bin2	Candidatus Gracilibacteria bacterium
GCA_018456195.1	JAGYHL000000000	SAMN18995122	bin5	Candidatus Gracilibacteria bacterium
GCA_002749055.1	PDTW00000000	SAMN07757435	DOLJORAL78_24_7	Candidatus Gracilibacteria bacterium
GCA_002748005.1	PDRC00000000	SAMN07757534	DOLZORAL124_23_13	Candidatus Gracilibacteria bacterium
GCA_002747975.1	PDRA00000000	SAMN07757536	DOLZORAL124_35_19	Candidatus Gracilibacteria bacterium
GCA_002746815.1	PDRB00000000	SAMN07757535	DOLZORAL124_24_19	Candidatus Gracilibacteria bacterium
GCA_002747515.1	PDPP00000000	SAMN07757592	DOLZORAL124_35_17	Candidatus Moraniibacteriota bacterium
GCA_002747475.1	PDPO00000000	SAMN07757593	DOLZORAL124_44_19	Candidatus Moraniibacteriota bacterium
GCA_002746885.1	PDRS00000000	SAMN07757507	DOLJORAL78_51_182	Candidatus Saccharibacteria bacterium
GCA_002742895.1	PDOQ00000000	SAMN07757621	DOLZORAL124_55_12	Candidatus Saccharibacteria bacterium
GCA_002742875.1	PDOR00000000	SAMN07757620	DOLZORAL124_54_13_A	Candidatus Saccharibacteria bacterium
GCA_002742965.1	PDOT00000000	SAMN07757618	DOLZORAL124_45_3	Candidatus Saccharibacteria bacterium
GCA_002742955.1	PDOS00000000	SAMN07757619	DOLZORAL124_51_31	Candidatus Saccharibacteria bacterium
GCA_002742975.1	PDOU00000000	SAMN07757617	DOLZORAL124_45_28	Candidatus Saccharibacteria bacterium
GCA_002749035.1	PDTU00000000	SAMN07757437	DOLJORAL78_42_5	Cardiobacteriales bacterium
GCA_002746795.1	PDQY00000000	SAMN07757540	DOLZORAL124_50_6	Chloroflexota bacterium
GCA_002748985.1	PDTT00000000	SAMN07757438	DOLJORAL78_50_32	Chloroflexota bacterium
GCA_002748995.1	PDTS00000000	SAMN07757440	DOLJORAL78_45_29	Clostridiales bacterium
GCA_002747885.1	PDQV00000000	SAMN07757546	DOLZORAL124_44_24	Clostridiales bacterium
GCA_002746745.1	PDQU00000000	SAMN07757547	DOLZORAL124_46_30	Clostridiales bacterium
GCA_002746755.1	PDQX00000000	SAMN07757542	DOLZORAL124_28_24_A	Clostridiales bacterium
GCA_002747925.1	PDQW00000000	SAMN07757543	DOLZORAL124_33_24	Clostridiales bacterium
GCA_018457205.1	JAGYHN000000000	SAMN18995124	bin7	Corynebacteriaceae bacterium
GCA_002747855.1	PDQR00000000	SAMN07757550	DOLZORAL124_47_46	Deltaproteobacteria bacterium
GCA_002747805.1	PDQP00000000	SAMN07757552	DOLZORAL124_49_6	Deltaproteobacteria bacterium
GCA_002747825.1	PDQQ00000000	SAMN07757551	DOLZORAL124_49_33	Deltaproteobacteria bacterium
GCA_002748865.1	PDTM00000000	SAMN07757448	DOLJORAL78_52_16	Deltaproteobacteria bacterium
GCA_002748835.1	PDTL00000000	SAMN07757449	DOLJORAL78_53_22	Deltaproteobacteria bacterium
GCA_002748825.1	PDTJ00000000	SAMN07757451	DOLJORAL78_69_6	Deltaproteobacteria bacterium
GCA_002748895.1	PDTO00000000	SAMN07757446	DOLJORAL78_44_4	Deltaproteobacteria bacterium
GCA_002748915.1	PDTP00000000	SAMN07757445	DOLJORAL78_35_19	Deltaproteobacteria bacterium
GCA_002748905.1	PDTN00000000	SAMN07757447	DOLJORAL78_50_10	Deltaproteobacteria bacterium
GCA_002747895.1	PDQS00000000	SAMN07757549	DOLZORAL124_35_11	Deltaproteobacteria bacterium
GCA_002747175.1	PDTK00000000	SAMN07757450	DOLJORAL78_54_23	Deltaproteobacteria bacterium
GCA_002747145.1	PDTI00000000	SAMN07757452	DOLJORAL78_47_202	Desulfobacter postgatei
GCA_002746735.1	PDQN00000000	SAMN07757560	DOLZORAL124_52_35	Desulfobacterales bacterium
GCA_002746715.1	PDQL00000000	SAMN07757562	DOLZORAL124_50_39	Desulfobacterales bacterium
GCA_002748815.1	PDTH00000000	SAMN07757453	DOLJORAL78_47_17	Desulfobacterales bacterium
GCA_002748775.1	PDTG00000000	SAMN07757456	DOLJORAL78_48_6	Desulfobacterales bacterium
GCA_002747785.1	PDQO00000000	SAMN07757556	DOLZORAL124_47_24	Desulfobacterales bacterium
GCA_002747775.1	PDQM00000000	SAMN07757561	DOLZORAL124_58_51	Desulfobacterales bacterium
GCA_002748765.1	PDTF00000000	SAMN07757458	DOLJORAL78_47_11	Desulfobulbus propionicus
GCA_002748755.1	PDTD00000000	SAMN07757460	DOLJORAL78_50_64	Desulfobulbus propionicus
GCA_002748735.1	PDTC00000000	SAMN07757461	DOLJORAL78_53_16	Desulfobulbus propionicus
GCA_002746685.1	PDQK00000000	SAMN07757563	DOLZORAL124_48_34	Desulfobulbus propionicus
GCA_002747135.1	PDTE00000000	SAMN07757459	DOLJORAL78_47_9	Desulfobulbus propionicus
GCA_002749335.1	PDQJ00000000	SAMN07757564	DOLZORAL124_58_48	Desulfococcus sp.
GCA_002748665.1	PDTB00000000	SAMN07757462	DOLJORAL78_54_10	Dethiosulfovibrio peptidovorans
GCA_002749385.1	PDTA00000000	SAMN07757463	DOLJORAL78_39_8	Draconibacterium sp.
GCA_002749305.1	PDQI00000000	SAMN07757566	DOLZORAL124_36_26_B	Draconibacterium sp.
GCA_002749235.1	PDQH00000000	SAMN07757567	DOLZORAL124_39_30	Draconibacterium sp.
GCA_018456185.1	JAGYHR000000000	SAMN18995129	bin12	Flavobacteriaceae bacterium
GCA_002746675.1	PDQF00000000	SAMN07757570	DOLZORAL124_35_127	Flavobacteriales bacterium
GCA_002747105.1	PDSY00000000	SAMN07757465	DOLJORAL78_33_11	Flavobacteriales bacterium
GCA_002748655.1	PDSX00000000	SAMN07757466	DOLJORAL78_35_15	Flavobacteriales bacterium
GCA_002748695.1	PDSW00000000	SAMN07757467	DOLJORAL78_38_80	Flavobacteriales bacterium
GCA_002747735.1	PDQE00000000	SAMN07757571	DOLZORAL124_35_137	Flavobacteriales bacterium
GCA_002747695.1	PDQD00000000	SAMN07757572	DOLZORAL124_38_11	Flavobacteriia bacterium
GCA_002747665.1	PDQC00000000	SAMN07757573	DOLZORAL124_27_10	Fusobacteriales bacterium
GCA_018457305.1	JAGYHM000000000	SAMN18995123	bin6	Fusobacterium sp.
GCA_018457245.1	JAGYHP000000000	SAMN18995127	bin10	Gammaproteobacteria bacterium
GCA_018456075.1	JAGYHU000000000	SAMN18995132	bin15	Gammaproteobacteria bacterium
GCA_018456065.1	JAGYHX000000000	SAMN18995135	bin18	Gammaproteobacteria bacterium
GCA_002747685.1	PDQB00000000	SAMN07757577	DOLZORAL124_43_27	Gammaproteobacteria bacterium
GCA_002748585.1	PDST00000000	SAMN07757472	DOLJORAL78_45_32	Gammaproteobacteria bacterium
GCA_002748605.1	PDSU00000000	SAMN07757471	DOLJORAL78_44_24	Gammaproteobacteria bacterium
GCA_002748595.1	PDSS00000000	SAMN07757474	DOLJORAL78_46_38	Gammaproteobacteria bacterium
GCA_002748575.1	PDSR00000000	SAMN07757476	DOLJORAL78_48_5	Gammaproteobacteria bacterium
GCA_002748555.1	PDSP00000000	SAMN07757478	DOLJORAL78_49_22	Gammaproteobacteria bacterium
GCA_002748505.1	PDSN00000000	SAMN07757480	DOLJORAL78_55_23	Gammaproteobacteria bacterium
GCA_002748495.1	PDSM00000000	SAMN07757481	DOLJORAL78_62_3.8	Gammaproteobacteria bacterium
GCA_002748515.1	PDSO00000000	SAMN07757479	DOLJORAL78_50_25	Gammaproteobacteria bacterium
GCA_002747655.1	PDQA00000000	SAMN07757579	DOLZORAL124_46_25	Gammaproteobacteria bacterium
GCA_002747635.1	PDPY00000000	SAMN07757581	DOLZORAL124_47_28	Gammaproteobacteria bacterium
GCA_002747615.1	PDPX00000000	SAMN07757584	DOLZORAL124_49_28	Gammaproteobacteria bacterium
GCA_002747095.1	PDSV00000000	SAMN07757469	DOLJORAL78_37_15	Gammaproteobacteria bacterium
GCA_002747585.1	PDPW00000000	SAMN07757585	DOLZORAL124_50_31	Gammaproteobacteria bacterium
GCA_002747545.1	PDPV00000000	SAMN07757586	DOLZORAL124_54_99	Gammaproteobacteria bacterium
GCA_002746635.1	PDPZ00000000	SAMN07757580	DOLZORAL124_47_200	Gammaproteobacteria bacterium
GCA_002746645.1	PDPU00000000	SAMN07757587	DOLZORAL124_62_170	Gammaproteobacteria bacterium
GCA_002747055.1	PDSQ00000000	SAMN07757477	DOLJORAL78_48_82	Gammaproteobacteria bacterium
GCA_002746605.1	PDPT00000000	SAMN07757588	DOLZORAL124_34_18	Ignavibacteriota bacterium
GCA_002748455.1	PDSL00000000	SAMN07757482	DOLJORAL78_61_10	Ilumatobacter coccineus
GCA_018606675.1	JAGYHO000000000	SAMN18995125	bin8	Malasseziomycetes sp.
GCA_002749285.1	PDPR00000000	SAMN07757590	DOLZORAL124_41_26	Maribacter sp.
GCA_002748415.1	PDSI00000000	SAMN07757485	DOLJORAL78_68_866	Micrococcales bacterium
GCA_002747535.1	PDPQ00000000	SAMN07757591	DOLZORAL124_68_340	Micrococcales bacterium
GCA_018456165.1	JAGYHS000000000	SAMN18995130	bin13	Moraxellaceae bacterium
GCA_002748395.1	PDSH00000000	SAMN07757487	DOLJORAL78_47_21	Neptuniibacter caesariensis
GCA_002748375.1	PDSG00000000	SAMN07757488	DOLJORAL78_49_30	Neptuniibacter caesariensis
GCA_018457285.1	JAGYHT000000000	SAMN18995131	bin14	Oceanivirga sp.
GCA_002749275.1	PDPN00000000	SAMN07757594	DOLZORAL124_33_28	Paludibacter sp.
GCA_018457225.1	JAGYHW000000000	SAMN18995134	bin17	Pasteurella sp.
GCA_002747445.1	PDPM00000000	SAMN07757595	DOLZORAL124_35_32	Pasteurellales bacterium
GCA_002748355.1	PDSF00000000	SAMN07757489	DOLJORAL78_63_9	Planctomycetota bacterium
GCA_002749195.1	PDPL00000000	SAMN07757596	DOLZORAL124_31_116	Polaribacter sp.
GCA_002746595.1	PDPK00000000	SAMN07757597	DOLZORAL124_60_32	Propionibacteriales bacterium
GCA_002749245.1	PDPJ00000000	SAMN07757598	DOLZORAL124_47_8_B	Propionibacterium sp.
GCA_002749365.1	PDSE00000000	SAMN07757490	DOLJORAL78_63_11	Propionibacterium sp.
GCA_002746545.1	PDPB00000000	SAMN07757606	DOLZORAL124_40_60	Pseudomonadales bacterium
GCA_002746565.1	PDPI00000000	SAMN07757599	DOLZORAL124_35_8	Pseudomonadota bacterium
GCA_002747045.1	PDSB00000000	SAMN07757493	DOLJORAL78_72_5	Pseudomonadota bacterium
GCA_002747455.1	PDPG00000000	SAMN07757601	DOLZORAL124_48_12	Pseudomonadota bacterium
GCA_002747435.1	PDPH00000000	SAMN07757600	DOLZORAL124_45_7	Pseudomonadota bacterium
GCA_002747405.1	PDPF00000000	SAMN07757602	DOLZORAL124_49_4	Pseudomonadota bacterium
GCA_002747395.1	PDPE00000000	SAMN07757603	DOLZORAL124_50_18	Pseudomonadota bacterium
GCA_002747365.1	PDPD00000000	SAMN07757604	DOLZORAL124_55_4	Pseudomonadota bacterium
GCA_002747355.1	PDPC00000000	SAMN07757605	DOLZORAL124_67_5.8	Pseudomonadota bacterium
GCA_002748315.1	PDSC00000000	SAMN07757492	DOLJORAL78_67_10	Pseudomonadota bacterium
GCA_002748285.1	PDSA00000000	SAMN07757495	DOLJORAL78_59_82	Rhodobacterales bacterium
GCA_002748265.1	PDRY00000000	SAMN07757499	DOLJORAL78_64_13	Rhodobacterales bacterium
GCA_002747325.1	PDOZ00000000	SAMN07757609	DOLZORAL124_62_15	Rhodobacterales bacterium
GCA_002747315.1	PDOY00000000	SAMN07757610	DOLZORAL124_63_33	Rhodobacterales bacterium
GCA_002746955.1	PDRX00000000	SAMN07757500	DOLJORAL78_64_82	Rhodobacterales bacterium
GCA_002746935.1	PDRW00000000	SAMN07757501	DOLJORAL78_66_20	Rhodobacterales bacterium
GCA_002746515.1	PDPA00000000	SAMN07757608	DOLZORAL124_55_27	Rhodobacterales bacterium
GCA_002747035.1	PDRZ00000000	SAMN07757497	DOLJORAL78_60_29	Rhodobacterales bacterium
GCA_002748255.1	PDRV00000000	SAMN07757502	DOLJORAL78_55_3	Sorangium cellulosum
GCA_002748225.1	PDRU00000000	SAMN07757503	DOLJORAL78_50_23	Spirochaetales bacterium
GCA_018456245.1	JAGYHQ000000000	SAMN18995128	bin11	Tenacibaculum sp.
GCA_002746895.1	PDRT00000000	SAMN07757506	DOLJORAL78_51_81	Thiothrix nivea
GCA_002746465.1	PDOV00000000	SAMN07757616	DOLZORAL124_48_26	Thiotrichales bacterium
GCA_002747265.1	PDOW00000000	SAMN07757615	DOLZORAL124_39_15	Thiotrichales bacterium
GCA_002749205.1	PDOP00000000	SAMN07757622	DOLZORAL124_36_15	Treponema sp.
GCA_002748955.1	PDTQ00000000	SAMN07757444	DOLJORAL78_65_58	bacterium DOLJORAL78_65_58
GCA_002747745.1	PDQG00000000	SAMN07757569	DOLZORAL124_38_8	bacterium DOLZORAL124_38_8
GCA_002747875.1	PDQT00000000	SAMN07757548	DOLZORAL124_64_63	bacterium DOLZORAL124_64_63
GCA_002747525.1	PDPS00000000	SAMN07757589	DOLZORAL124_49_17	candidate division KSB3 bacterium
GCA_002748425.1	PDSJ00000000	SAMN07757484	DOLJORAL78_50_49	candidate division KSB3 bacterium
GCA_002748445.1	PDSK00000000	SAMN07757483	DOLJORAL78_47_16	candidate division KSB3 bacterium
GCA_002746475.1	PDOX00000000	SAMN07757614	DOLZORAL124_32_15	candidate division SR1 bacterium
GCA_018606665.1	JAHCSF000000000	SAMN19014081	-	oral metagenome
GCA_002754915.1	PDWI00000000	SAMN01162508	-	oral metagenome
GCA_002754885.1	PDWJ00000000	SAMN01162460	-	oral metagenome

SRA Data Details

Parameter	Value
Data volume, Gbases	99
Data volume, Mbytes	62077

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metagenome

Multiple body sites from marine mammals, targeted locus (loci) and metagenome shotgun sequencing

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