U.S. flag

An official website of the United States government

Display Settings:

Format

Send to:

Choose Destination

Links from BioProject

Accession: PRJNA183206 ID: 183206

Census of Deep Life

The Deep Carbon Observatory (DCO) sponsored a workshop at the Wrigley Field Station on Catalina Island CA (March 2010) to discuss Deep Life in marine and continental subsurface environments. This interdisciplinary working group produced the white paper Deep Subsurface Microbiology and the Deep Carbon Observatory ( http://dco.gl.ciw.edu/sites/dco.gl.ciw.edu/files/Deep%20Life%20White%20Paper.pdf ) which outlines key questions and research strategies for exploring 1) the genetic and physiological diversity of subsurface microbes, 2) the co-evolutionary and synergistic interactions of subsurface microbial populations, 3) their biomass, community structure and distribution in different geological systems, 4) their in situ growth and activity rates, and 5) the role of microbes in carbon and other geochemical cycles. More...
AccessionPRJNA183206
TypeUmbrella Metagenome project (Subtype:Metagenome)
SubmissionRegistration date: 7-Dec-2012
Marine Biological Laboratory
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)2239
WGS master89
SRA Experiments1456
Publications
PubMed6
PMC2
Other datasets
BioSample1014
Assembly89
SRA Data Details
ParameterValue
Data volume, Gbases2,401
Data volume, Tbytes1.11
This project encompasses the following 119 sub-projects:
Project TypeNumber of Projects
Genome sequencing

3
1
5
1
10
BioProject
accession
Assembly
level
NameTitle
PRJNA341272 SRA or TraceAlkaliphilusAlkaliphilus Genome sequencing (Marine Biological Laboratory)
PRJNA477509 SRA or TraceMethanothermococcusMethanothermococcus single cell amplified whole genome sequencing (Marine Biological Laboratory)
PRJNA340367 SRA or TraceUncultivated microorganisms from Baltic Sea sedimentsUncultivated microorganisms from Baltic Sea sediments Genome sequencing (Marine Biological Laboratory)
PRJNA327016 SRA or Traceaquifer metagenomeaquifer metagenome Raw sequence reads (Institut de Physique du Globe...)
PRJNA627655 Scaffoldsaquifer metagenomeMetagenome from a deep subsurface, shale-hosted aquifer of the Volcanic Eifel (University Duisburg-Essen)
List all 10 'Genome sequencing' projects...
Other2
BioProject
accession
NameTitle
PRJEB22782DeepHotMicrobeDeepHotMicrobe: Pyhäsalmi metagenomes. Genomic clues on microbial adaptation to life in deep bedrock (Geological Survey of Finland)
PRJEB35728DeepHotMicrobe: Otaniemi bacterial community 16S rRNA gene amplicon sequencingDeepHotMicrobe: Otaniemi bacterial community 16S rRNA gene amplicon sequencing (Geological Survey of Finland)
metagenome59
BioProject
accession
NameTitle
PRJNA84439Whole environmental genomic DNA from Census of Deep LifeWhole environmental genomic DNA from Census of Deep Life (Census of Deep Life)
PRJNA265986aquatic metagenomeSerpentinizing microbial ecosystems Metagenome (Marine Biological Laboratory)
PRJNA280842aquatic metagenomeSubglacial lake metagenome (Marine Biological Laboratory)
PRJNA421137aquatic metagenomePeninsula Iberica serpentinization-driven deep aquifer metagenomes (Marine Biological Laboratory)
PRJNA340364aquifer metagenomeaquifer metagenome Metagenome (Marine Biological Laboratory)
List all 59 'metagenome' projects...
targeted loci48
BioProject
accession
OrganismTitle
PRJNA1052675alkali spring metagenomeDeep serpentinization-driven hyperalkaline springs Targeted loci environmental (Marine Biological Laboratory)
PRJNA183204aquatic metagenomeIcelandic Lake Targeted Locus (Loci) (Census of Deep Life)
PRJNA192700aquatic metagenomeSerp Targeted Locus (Loci) (University of Washington)
PRJNA263371aquatic metagenomeFracture water microbiome Targeted Locus (Loci) (Census of Deep Life)
PRJNA268940aquatic metagenomeDeep Subsurface Targeted Locus (Loci) (Census of Deep Life)
List all 48 'targeted loci' projects...

Supplemental Content

Support Center