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Accession: PRJNA393749 ID: 393749

Staphylococcus aureus

Colonizing and infecting subclones diverge during Staphylococcus aureus infection

See Genome Information for Staphylococcus aureus
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6490 additional projects are related by organism.
Complete genome sequences from clone pairs obtained from colonizing and infected sites of individual bacteremic patients in whom S. More...
AccessionPRJNA393749
Data TypeAssembly
ScopeMultiisolate
OrganismStaphylococcus aureus[Taxonomy ID: 1280]
Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus
Publications
  • Altman DR et al., "Genome Plasticity of agr-Defective Staphylococcus aureus during Clinical Infection.", Infect Immun, 2018 Oct;86(10)
  • von Eiff C et al., "Nasal carriage as a source of Staphylococcus aureus bacteremia. Study Group.", N Engl J Med, 2001 Jan 4;344(1):11-6
Grants
  • "the New York State Empire Clinical Research Investigator Program" (Grant ID n/a, New York State Department of Health)
  • "Multiscale analysis of immune profiling data from dengue and chikungunya virus infections in humans" (Grant ID F30 AI122673, National Institute of Allergy and Infectious Diseases Extramural Activities)
  • "Role of precipitous virulence in invasiveness of community-acquired methicillin-r" (Grant ID R01 AI103268, National Institute of Allergy and Infectious Diseases Extramural Activities)
  • "Investigating genomic factors and microbiome features that impact CDI transmission and prognosis" (Grant ID R01 AI119145, National Institute of Allergy and Infectious Diseases Extramural Activities)
  • "n/a" (Grant ID HHSN272201400019C, National Institute of Allergy and Infectious Diseases)
  • "NRSA Institutional Research Training Grant for Global Health Research" (Grant ID T32 AI 7647, National Institute of Allergy and Infectious Diseases)
  • "n/a" (Grant ID T32 AI007180, National Institute of Allergy and Infectious Diseases)
  • "n/a" (Grant ID KL2 TR001435, National Center for Advancing Translational Sciences)
SubmissionRegistration date: 10-Jul-2017
Icahn School of Medicine
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (Genomic DNA)40
SRA Experiments8
Protein Sequences67703
Publications
PubMed2
PMC1
Other datasets
BioSample39
GEO DataSets1
Assembly26
Genome assemblies, organelles and plasmids:
Assembly GCA_003354545.1 :
NameRefSeqGenBank
Chromosome NZ_CP022717.1CP022717.1
Assembly GCA_003354565.1 :
NameRefSeqGenBank
Chromosome NZ_CP022903.1CP022903.1
Assembly GCA_003354585.1 :
NameRefSeqGenBank
Chromosome NZ_CP022904.1CP022904.1
Assembly GCA_003354605.1 :
NameRefSeqGenBank
Chromosome NZ_CP022898.1CP022898.1
Assembly GCA_003354625.1 :
NameRefSeqGenBank
Chromosome NZ_CP022900.1CP022900.1
Assembly GCA_003354645.1 :
NameRefSeqGenBank
Chromosome NZ_CP022897.1CP022897.1
Assembly GCA_003354665.1 :
NameRefSeqGenBank
Chromosome NZ_CP022902.1CP022902.1
Assembly GCA_003354685.1 :
NameRefSeqGenBank
Chromosome NZ_CP022896.1CP022896.1
Assembly GCA_003354705.1 :
NameRefSeqGenBank
Chromosome NZ_CP022893.1CP022893.1
Assembly GCA_003354725.1 :
NameRefSeqGenBank
Chromosome NZ_CP022899.1CP022899.1
Assembly GCA_003354745.1 :
NameRefSeqGenBank
Chromosome NZ_CP022901.1CP022901.1
Assembly GCA_003354765.1 :
NameRefSeqGenBank
Chromosome NZ_CP022894.1CP022894.1
Assembly GCA_003354785.1 :
NameRefSeqGenBank
Chromosome NZ_CP022895.1CP022895.1
Assembly GCA_003354805.1 :
NameRefSeqGenBank
Chromosome NZ_CP022892.1CP022892.1
Assembly GCA_003354865.1 :
NameRefSeqGenBank
Chromosome NZ_CP022718.1CP022718.1
Plasmid NZ_CP022719.1CP022719.1
Assembly GCA_003354885.1 :
NameRefSeqGenBank
Chromosome NZ_CP022910.1CP022910.1
Plasmid NZ_CP022911.1CP022911.1
Assembly GCA_003354905.1 :
NameRefSeqGenBank
Chromosome NZ_CP022682.1CP022682.1
Plasmid NZ_CP022683.1CP022683.1
Assembly GCA_003354925.1 :
NameRefSeqGenBank
Chromosome NZ_CP022720.1CP022720.1
Plasmid NZ_CP022721.1CP022721.1
Assembly GCA_003354945.1 :
NameRefSeqGenBank
Chromosome NZ_CP022908.1CP022908.1
Plasmid NZ_CP022909.1CP022909.1
Assembly GCA_003354965.1 :
NameRefSeqGenBank
Chromosome NZ_CP022906.1CP022906.1
Plasmid NZ_CP022907.1CP022907.1
Assembly GCA_003354985.1 :
NameRefSeqGenBank
Chromosome NZ_CP022905.1CP022905.1
Assembly GCA_003425545.1 :
NameRefSeqGenBank
Chromosome NZ_CP031667.1CP031667.1
Plasmid NZ_CP031668.1CP031668.1
Plasmid NZ_CP031669.1CP031669.1
Assembly GCA_003425835.1 :
NameRefSeqGenBank
Chromosome NZ_CP031664.1CP031664.1
Plasmid NZ_CP031665.1CP031665.1
Plasmid NZ_CP031666.1CP031666.1
Assembly GCA_003425885.1 :
NameRefSeqGenBank
Chromosome NZ_CP031661.1CP031661.1
Plasmid NZ_CP031662.1CP031662.1
Plasmid NZ_CP031663.1CP031663.1
Assembly GCA_003425915.1 :
NameRefSeqGenBank
Chromosome NZ_CP031670.1CP031670.1
Plasmid NZ_CP031671.1CP031671.1
Plasmid NZ_CP031672.1CP031672.1
Assembly GCA_003426145.1 :
NameRefSeqGenBank
Chromosome NZ_CP031673.1CP031673.1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes2
SRA Data Details
ParameterValue
Data volume, Gbases21
Data volume, Mbytes8262

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