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Organizing biological data
3' RACE-seq of endogenous LINE-1 mRNA's 3' non-templated ends in PA-1 control kd, XRN1 kd, DCP2 kd, and DIS3L2 kd (kd by RNAi for 48h = set 1, or 126h = set 2), and 293T wild-type and XRN1 KO.
3' RACE-seq of reporter and endogenous LINE-1 mRNA's 3' non-templated ends in 293T and PA-1 cells under permanent (genomic knock-out) or temporal (RNAi) depletions of XRN1, DCP2, (DIS3L2) and control conditions
Draft genome sequence of Pseudomonas sp. V3/K/3/5
3' RACE-seq of reporter LINE-1 and control mRNAs' 3' non-templated ends in 293T 'wild-type', XRN1 KO, DCP2 KO, DCP2 plus XRN1 KO cells
C-Terminal Binding Protein (CtBP) a critical regulator of ErbB2/3 signaling in PDAC
Alternation of gene expression when expressing FASN-CTF in ced-3(-) null animalsn under ER stress
Rice paddy soil microbiome 16S rRNA: Household biomass ash as a fertilizer to sustainability
16S-soil-ash-Bangladesh, Here we investigated in large scale field trials across two geographic regions and two seasons, if domestic hearth ash can be used as a fertilizer for paddy rice cultivation, how geographic, season and application of household ash to soil impact on rice yield, and grain quality (accumulation of As, Cd, alongside nutrient elements) and rhizosphere soil microbial composition. The study was conducted in 9 homesteads each for two geographic regions (Madhupur & Barind tract), over two seasons (wet &dry). In each season, the following 3 treatments were applied: 1=control (conventional NKPS), 2= Ash (ash to supply all required P plus urea and K), 3 =control plus ash (1 t ash per ha plus conventional NPKS). At the end of each season, grain yield, mineral elements in grain (ICP-MS) and rhizosphere soil microbial community (16S rRNA amplicon sequencing, Illumina) were assessed and at the end of the overall experiment the overall impact on mineral elements in soil (XRF) evaluated.
Drivers_of_antimicrobial_resistance_in_Uganda_and_Malawi_3
Expression data of islets between 3- and 7- day old pigs
FUBP1 is a core splicing factor that facilitates 3' splice site recognition and splicing of long introns [In vivo iCLIP]
RNA-seq Analysis of 14-day-old WT, bcl7a(brip3), bcl7b(brip4), bcl7a bcl7b(brip3 brip4), bcl7a bcl7b brm-3(brip3 brip4 brm-3) and bcl7a bcl7b brm-1(brip3 brip4 brm-1) seedlings under short day condition
Galectin-3 activates microglia in arthritic pain: a process defective in Alzheimer’s disease mice
DNA dioxygenases Tet2/3 control epithelial differentiation (bisulfite-seq)
A 3´ UTR-derived small RNA connecting nitrogen and carbon metabolism in enteric bacteria
Klebsiella grimontii and Escherichia coli isolates co-possessing blaKPC-3 in a pQil plasmid
Long-term impact of antimicrobials on the efficiency and the microbial community during anaerobic digestion of sewage sludge
This study aimed to evaluate the simultaneous and long-term effect of increasing concentrations of three antimicrobials belonging to various classes of antibiotics (β-lactams, fluoroquinolones, and nitroimidazoles) on (1) the efficiency of anaerobic digestion of sewage sludge, (2) qualitative and quantitative changes in microbial consortia responsible for the methane fermentation process, (3) the fate of antibiotic resistance genes (ARGs).
Transcriptional profiling to elucidate processes regulated by 2',3'-cyclic nucleotide phosphodiesterase (CNPase) in Escherichia coli K12 BW25113 (E. coli)
ChIP-seq of a K562 cell line model with a patient-based t(3;8) translocation
Bruton’s tyrosine kinase (BTK) and indoleamine 2,3-dioxygenase (IDO) block differentiation of inflammatory dendritic cells in tumors [scRNA-seq]
Bruton’s tyrosine kinase (BTK) and indoleamine 2,3-dioxygenase (IDO) block differentiation of inflammatory dendritic cells in tumors
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