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Organizing biological data

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Select item 9868731.

Fungal metabolism and free amino acid content may predict nitrogen transfer to the host plant in the ectomycorrhizal relationship between Pisolithus spp. and Eucalyptus grandis

: Project data type: Transcriptome or Gene expression

Scope:: Multispecies

Hawkesbury Institute for the Environment, Western Sydney University

Accession:: PRJNA986873
ID:: 986873

Select item 9245692.

Improving methane production from waste activated sludge (WAS) assisted by Fe (II)-activated peroxydisulfate (PDS) pretreatment via anaerobic digestion: Role of interspecific syntrophism mediated by sulfate-reducing bacteria (SRB)

: Project data type: Raw sequence reads

Scope:: Multispecies

Taiyuan University of Technology

Accession:: PRJNA924569
ID:: 924569

Select item 9178803.

A549 transcriptomic response to nanomaterials, intact and degraded Mn3O4-functionalized graphene, Mn3O4 nanoparticles

: Project data type: Other

Scope:: Monoisolate

iccram-university of burgos

Accession:: PRJEB34526
ID:: 917880

Select item 8039564.

Escherichia coli

High-throughput mapping of RNA solvent accessibility at the single-nucleotide resolution by RtcB ligation between a fixed 5'-OH-end linker and unique 3'-P-end fragments from hydroxyl radical cleavage

Taxonomy:: Escherichia coli

: Project data type: Raw sequence reads

Scope:: Monoisolate

Griffith University

Accession:: PRJNA803956
ID:: 803956

Select item 8029815.

Escherichia coli strain:B strain

RNA solvent accessibility by hydroxyl radical probing

Taxonomy:: Escherichia coli

: Project data type: Raw sequence reads

Scope:: Monoisolate

Griffith University

Accession:: PRJNA802981
ID:: 802981

Select item 7827376.

Rapid Acceleration of Diagnostics - Radical (RADx-rad): Multiparametric Integrated Molecular Detection of SARS-CoV-2 from Biofluids by Adapting Single Extracellular Vesicle Characterization Technologies

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Phenotype or Genotype

Scope:: Multiisolate

OHIO STATE UNIVERSITY

Accession:: PRJNA782737
ID:: 782737

Select item 7827367.

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Umbrella project (Subtype: Authorized Access)

Accession:: PRJNA782736
ID:: 782736

Select item 7575188.

Rapid Acceleration of Diagnostics - Radical (RADx-rad): A SARS-CoV-2 Breathalyzer for Direct Virus Detection

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Phenotype or Genotype

Scope:: Multiisolate

AEROSOL DEVICES, INC.

Accession:: PRJNA757518
ID:: 757518

Select item 7575179.

Rapid Acceleration of Diagnostics - Radical (RADx-rad): A SARS-CoV-2 Breathalyzer for Direct Virus Detection

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Umbrella project (Subtype: Authorized Access)

Accession:: PRJNA757517
ID:: 757517

Select item 75021010.

Rapid Acceleration of Diagnostics - Radical (RADx-rad): MOF-SCENT: Metal-organic Frameworks for Screening COVID-19 by Electronic-Nose Technology to Improve Selectivity and Time Response

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Phenotype or Genotype

Scope:: Multiisolate

MISSOURI UNIVERSITY OF SCIENCE & TECHNOLOGY

Accession:: PRJNA750210
ID:: 750210

Select item 75018311.

Rapid Acceleration of Diagnostics - Radical (RADx-rad): MOF-SCENT: Metal-organic Frameworks for Screening COVID-19 by Electronic-Nose Technology to Improve Selectivity and Time Response

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Umbrella project (Subtype: Authorized Access)

Accession:: PRJNA750183
ID:: 750183

Select item 68269012.

Safranal's impact on hepatocellular carcinomas revealed through multi-omics

: Project data type: Raw sequence reads

Scope:: Multispecies

New York University Abu Dhabi

Accession:: PRJNA682690
ID:: 682690

Select item 63032913.

Exaiptasia diaphana strain:AIMS2-4

Assessment of a ROS-targeted bacterial probiotic aimed at improving thermal tolerance in the coral model, the sea anemone Exaiptasia diaphana

Taxonomy:: Exaiptasia diaphana

: Project data type: Raw sequence reads

Scope:: Multiisolate

University of Melbourne

Accession:: PRJNA630329
ID:: 630329

Select item 59386014.

Genome-wide gene expression profiles of primary prostate cancer

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Fred Hutchinson cancer research center

Accession:: PRJNA593860
ID:: 593860

Select item 51227115.

Divergent biological response to neoadjuvant chemotherapy in muscle-invasive bladder cancer

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

GenomeDx

Accession:: PRJNA512271
ID:: 512271

Select item 48935716.

Antibiotic resistance in bacteria: Does a previously de novo acquired antibiotic resistance influences the adaptation to a second antibiotic?

: Project data type: Raw sequence reads

Scope:: Multispecies

University of Amsterdam

Accession:: PRJNA489357
ID:: 489357

Select item 41384017.

DNA hypermethylation encroachment at CpG island borders in cancer is predisposed by H3K4 monomethylation [WGBS_Hs]

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Epigenomics

Scope:: Multiisolate

Developmental Epigenomics, Genomics and Epigenetics, Garvan Institute

Accession:: PRJNA413840
ID:: 413840

Select item 40815318.

Directed hydroxyl radical probing reveals Upf1 binds 80S ribosomal E site rRNA at L1 stalk

Organism:: Saccharomyces cerevisiae

Taxonomy:: Saccharomyces cerevisiae (brewer's yeast)

: Project data type: Other

Scope:: Multiisolate

Schwartz, Biology, Massachusetts Institute of Technology

Accession:: PRJNA408153
ID:: 408153

Select item 38837219.

Transcriptome profiling analysis of senescent gingival fibroblasts in response to Fusobacterium nucleatum infection

: Project data type: Raw sequence reads

Scope:: Multispecies

CHONNAM NATIONAL UNIVERSITY

Accession:: PRJNA388372
ID:: 388372

Select item 38565620.

Homo sapiens

Characterization of subcutaneous white adipose tissue gene expression profile in control and chronic kidney disease patients

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

INSERM U1060 CarMeN Lab, BioSciences, INSA-Lyon

Accession:: PRJNA385656
ID:: 385656

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