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1.

Single-Cell Analysis Reveals Novel Immune Perturbations in Fibrotic Hypersensitivity Pneumonitis

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Internal Medicine, Yale School of Medicine
Accession:
PRJNA1133168
ID:
1133168
2.

Human HFF cells large rearrangements detection after CRISPR-Cas9 nuclease (Fig. 5e)

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Variation
Scope:
Multiisolate
BioGO team 8, INSERM U1312 BRIC
Accession:
PRJNA986146
ID:
986146
3.

The second Validation set of the 95GC in 2013.

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Shinzaburo Noguchi, Breast and Endocrine Surgery, Osaka University
Accession:
PRJNA978565
ID:
978565
4.

Transfer of small RNA from extracellular vesicles secreted by primary human airway epithelial cells to Pseudomonas aeruginosa

Project data type: Transcriptome or Gene expression
Scope:
Multispecies
Bruce Stanton, Microbiology and Immunology, Geisel School of Medicine at Dartmouth
Accession:
PRJNA952190
ID:
952190
5.

ddRAD sequence data of Jacobaea vulgaris (Asteraceae) from both the native European and invasive North American range

ddRAD sequence data of Jacobaea vulgaris (Asteraceae)

Project data type: Other
Scope:
Monoisolate
HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.
Accession:
PRJEB56266
ID:
918197
6.

Beyond the spore: the exosporium sugar anthrose impacts vegetative Bacillus anthracis gene regulation in cis and trans

Taxonomy:
Bacillus anthracis
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
University of Florida
Accession:
PRJNA911342
ID:
911342
7.

Chimeric EGFR ChIP-seq of an MCF-10A clone expressing chimeric EGFR and Erbb2 receptors

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Epigenomics
Scope:
Multiisolate
Department of Biomedical Engineering, University of Virginia
Accession:
PRJNA892637
ID:
892637
8.

Stochastic 10-cell profiling of an MCF-10A clone expressing chimeric EGFR and Erbb2 receptors

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Department of Biomedical Engineering, University of Virginia
Accession:
PRJNA885448
ID:
885448
9.

Single-nucleus RNA-sequencing reveals singular gene signatures of human ductal cells during adaptation to insulin resistance

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Bioinformatics & Biostatistics Core, Joslin Diabetes Center
Accession:
PRJNA855228
ID:
855228
10.

Affymetrix SNP array data for kidney transplant samples

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Variation
Scope:
Multiisolate
Department of Medical Genetics, Southern Medical University
Accession:
PRJNA807291
ID:
807291
11.

VTECOneHealth

An investigation on the carriage and characteristics of Shiga-toxin producing Escherichia coli in the recto-anal junction of sheep presented for slaughter in Ireland

Project data type: Genome sequencing and assembly
Scope:
Monoisolate
Teagasc Food Research Centre, Ireland
Accession:
PRJEB46014
ID:
769360
12.

Transfer of small RNA from extracellular vesicles secreted by primary human airway epithelial cells to Pseudomonas aeruginosa

Taxonomy:
Pseudomonas aeruginosa
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Geisel School of Medicine at Dartmouth
Accession:
PRJNA731167
ID:
731167
13.

RNA-seq Reveals Differences in Expressed Tumor Mutation Burden in Colorectal and Endometrial Cancer With and Without Defective DNA Mismatch Repair

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Mayo Clinic
Accession:
PRJNA612305
ID:
612305
14.

GATA2 tumor suppressive role is displayed in an ERG driven AML mouse, unveiling a preleukemic phenotype

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Sheba Medical Center
Accession:
PRJNA599376
ID:
599376
15.

Sporadic activation of an oxidative stress-dependent NRF2–p53 signaling network in breast epithelial spheroids and premalignancies

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Department of Biomedical Engineering, University of Virginia
Accession:
PRJNA592817
ID:
592817
16.

Targeted sequencing of DAP1 gene locus in SLE patients and healthy controls

Project data type: Raw sequence reads
Scope:
Multispecies
UT SOUTH WESTERN MEDICAL CENTER DALLAS, UNIVERSITY OF TEXAS
Accession:
PRJNA588226
ID:
588226
17.

Chlamydomonas reinhardtii

Chlamydomonas reinhardtii gene expression profiling - Chlre_5e_180m2 transcriptome

Taxonomy:
Chlamydomonas reinhardtii
Project data type: Transcriptome or Gene expression
Scope:
Monoisolate
DOE Joint Genome Institute
Accession:
PRJNA584749
ID:
584749
18.

scRNA-seq of P2 mouse cochlea

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Monoisolate
Department: Institute for Genome Sciences, University of Maryland in Baltimore
Accession:
PRJNA559884
ID:
559884
19.

Epigenomic Landscape of Mouse Brain by Single Nucleus Methylation Sequencing [CEMBA181206_5E]

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Epigenomics
Scope:
Multiisolate
Ecker lab, Genomic Analysis Laboratory, HHMI-Salk-Institute
Accession:
PRJNA556882
ID:
556882
20.

Epigenomic Landscape of Mouse Brain by Single Nucleus Methylation Sequencing [CEMBA180925_5E]

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Epigenomics
Scope:
Multiisolate
Ecker lab, Genomic Analysis Laboratory, HHMI-Salk-Institute
Accession:
PRJNA556016
ID:
556016

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