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Accession: PRJEB46014 ID: 769360

VTECOneHealth

An investigation on the carriage and characteristics of Shiga-toxin producing Escherichia coli in the recto-anal junction of sheep presented for slaughter in Ireland

Shiga-toxin producing Escherichia coli (STEC) are a diverse group of pathogenic bacteria capable of causing serious human illness and serogroups O157 and O26 are frequently implicated in human disease. More...
AccessionPRJEB46014
Data TypeGenome sequencing and assembly
ScopeMonoisolate
SubmissionRegistration date: 7-Oct-2021
Teagasc Food Research Centre, Ireland
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)32841
WGS master178
SRA Experiments177
Other datasets
BioSample178
Assembly178
Assembly details:
Assembly levelNumber of Assemblies
178
178
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_911103375.1ContigCAJVIC000000000SAMEA8949126
09_A_22_4_1
GCA_911103255.1ContigCAJVHC000000000SAMEA8949091
04_A_6_3_1
GCA_911103335.1ContigCAJVHM000000000SAMEA8949141
15_A_12_1_5
GCA_911103325.1ContigCAJVIL000000000SAMEA8949134
13_A_20_3_2
GCA_911103345.1ContigCAJVHD000000000SAMEA8949098
09_A_6_4_1
GCA_911103355.1ContigCAJVGV000000000SAMEA8949085
04_A_24_1_1
GCA_911103315.1ContigCAJVIS000000000SAMEA8949121
11_A_10_3_3
GCA_911103385.1ContigCAJVHV000000000SAMEA8949093
04_A_11_5_1
GCA_911103295.1ContigCAJVHJ000000000SAMEA8949120
10_A_27_1_1
GCA_911103265.1ContigCAJVGX000000000SAMEA8949052
06_A_24_3_1
GCA_911198995.1ContigCAJVQE000000000SAMEA8949211
30_B_30_1_1
GCA_911104805.1ContigCAJVMU000000000SAMEA8949225
24_B_17_2_4
GCA_911105005.1ContigCAJVMP000000000SAMEA8949205
27_A_11_3_3
GCA_911104855.1ContigCAJVMZ000000000SAMEA8949210
30_B_27_1_1
GCA_911104895.1ContigCAJVNE000000000SAMEA8949222
22_B_20_3_5
GCA_911104835.1ContigCAJVMM000000000SAMEA8949199
22_B_26_1_1
GCA_911104875.1ContigCAJVMW000000000SAMEA8949218
6_A_4_1_1
GCA_911104915.1ContigCAJVNF000000000SAMEA8949207
30_B_2_3_3
GCA_911104975.1ContigCAJVMS000000000SAMEA8949203
25_B_17_3_1
GCA_911104955.1ContigCAJVMJ000000000SAMEA8949214
22_B_32_5_1
GCA_911104985.1ContigCAJVNA000000000SAMEA8949206
27_A_28_1_2
GCA_911104935.1ContigCAJVMQ000000000SAMEA8949201
24_B_6_1_1
GCA_911104865.1ContigCAJVNI000000000SAMEA8949200
24_B_1_1_2
GCA_911104905.1ContigCAJVMY000000000SAMEA8949213
21_B_16_4_1
GCA_911104885.1ContigCAJVMV000000000SAMEA8949209
30_B_12_2_1
GCA_911104845.1ContigCAJVML000000000SAMEA8949202
25_B_13_1_3
GCA_911104825.1ContigCAJVNH000000000SAMEA8949217
19_A_7_1_1
GCA_911104815.1ContigCAJVNC000000000SAMEA8949220
21_B_26_5_1
GCA_911105015.1ContigCAJVND000000000SAMEA8949197
22_B_18_1_1
GCA_911104995.1ContigCAJVMO000000000SAMEA8949208
30_B_6_2_3
GCA_911104925.1ContigCAJVMX000000000SAMEA8949219
09_A_25_3_1
GCA_911104965.1ContigCAJVMK000000000SAMEA8949212
5_A_24_3_1
GCA_911104945.1ContigCAJVNB000000000SAMEA8949216
24_B_7_2_2
GCA_911104775.1ContigCAJVMN000000000SAMEA8949215
27_A_7_1_1
GCA_911104745.1ContigCAJVMT000000000SAMEA8949221
13_A_3_1_2
GCA_911104755.1ContigCAJVMR000000000SAMEA8949224
26_B_22_2_4
GCA_911104785.1ContigCAJVMI000000000SAMEA8949204
26_B_9_4_1
GCA_911104795.1ContigCAJVNG000000000SAMEA8949198
22_B_24_2_1
GCA_911104765.1ContigCAJVMH000000000SAMEA8949223
23_B_11_1_1
GCA_911104375.1ContigCAJVLJ000000000SAMEA8949191
19_A_13_4_4
GCA_911104475.1ContigCAJVKU000000000SAMEA8949184
28_A_26_1_3
GCA_911104635.1ContigCAJVLL000000000SAMEA8949173
25_B_2_2_3
GCA_911104735.1ContigCAJVLG000000000SAMEA8949159
20_B_1_3_3
GCA_911104685.1ContigCAJVLY000000000SAMEA8949161
20_B_33_1_1
GCA_911104535.1ContigCAJVLR000000000SAMEA8949163
21_B_25_3_1
GCA_911104645.1ContigCAJVLN000000000SAMEA8949165
22_B_2_1_1
GCA_911104445.1ContigCAJVMB000000000SAMEA8949175
25_B_22_4_1
GCA_911104365.1ContigCAJVLH000000000SAMEA8949174
25_B_7_2_4
GCA_911104435.1ContigCAJVLK000000000SAMEA8949171
24_B_9_1_3
GCA_911104575.1ContigCAJVLW000000000SAMEA8949167
22_B_13_1_1
GCA_911104605.1ContigCAJVLX000000000SAMEA8949168
22_B_16_1_2
GCA_911104505.1ContigCAJVME000000000SAMEA8949178
26_B_28_1_1
GCA_911104625.1ContigCAJVLZ000000000SAMEA8949182
28_A_17_1_2
GCA_911104385.1ContigCAJVLA000000000SAMEA8949166
22_B_8_4_1
GCA_911104495.1ContigCAJVLD000000000SAMEA8949170
23_B_27_5_1
GCA_911104565.1ContigCAJVKY000000000SAMEA8949160
20_B_22_4_2
GCA_911104615.1ContigCAJVKX000000000SAMEA8949179
27_A_3_5_5
GCA_911104655.1ContigCAJVKZ000000000SAMEA8949193
20_B_13_3_1
GCA_911104455.1ContigCAJVLQ000000000SAMEA8949190
11_A_31_3_1
GCA_911104725.1ContigCAJVLM000000000SAMEA8949192
19_A_29_3_1
GCA_911104415.1ContigCAJVMA000000000SAMEA8949186
29_B_11_2_1
GCA_911104515.1ContigCAJVLI000000000SAMEA8949176
26_B_3_3_2
GCA_911104695.1ContigCAJVLC000000000SAMEA8949172
24_B_22_1_3
GCA_911104545.1ContigCAJVLT000000000SAMEA8949169
23_B_8_2_1
GCA_911104425.1ContigCAJVLO000000000SAMEA8949183
28_A_22_5_1
GCA_911104465.1ContigCAJVLF000000000SAMEA8949162
21_B_15_4_5
GCA_911104665.1ContigCAJVMG000000000SAMEA8949187
29_B_21_2_2
GCA_911104585.1ContigCAJVLP000000000SAMEA8949177
26_B_21_5_1
GCA_911104595.1ContigCAJVKW000000000SAMEA8949181
28_A_2_3_4
GCA_911104525.1ContigCAJVLS000000000SAMEA8949180
27_A_20_2_4
GCA_911104395.1ContigCAJVKV000000000SAMEA8949164
21_B_30_1_1
GCA_911104405.1ContigCAJVMC000000000SAMEA8949158
19_A_25_5_2
GCA_911104555.1ContigCAJVLV000000000SAMEA8949189
11_A_23_4_1
GCA_911104715.1ContigCAJVMF000000000SAMEA8949196
22_B_10_4_1
GCA_911104705.1ContigCAJVLB000000000SAMEA8949188
29_B_27_2_1
GCA_911104675.1ContigCAJVLE000000000SAMEA8949185
29_B_1_5_3
GCA_911104485.1ContigCAJVLU000000000SAMEA8949194
20_B_28_4_1
GCA_911104355.1ContigCAJVMD000000000SAMEA8949195
21_B_6_5_1
GCA_911104185.1ContigCAJVJY000000000SAMEA8949086
04_A_7_5_1
GCA_911104315.1ContigCAJVKG000000000SAMEA8949089
05_A_5_5_1
GCA_911104245.1ContigCAJVJG000000000SAMEA8949058
7_A_6_2_1
GCA_911104335.1ContigCAJVJH000000000SAMEA8949142
15_A_16_1_2
GCA_911104305.1ContigCAJVKD000000000SAMEA8949106
09_A_12_5_3
GCA_911104225.1ContigCAJVJC000000000SAMEA8949132
13_A_2_4_1
GCA_911104345.1ContigCAJVIZ000000000SAMEA8949053
06_A_25_6_1
GCA_911104205.1ContigCAJVJV000000000SAMEA8949073
03_A_20_4_5
GCA_911104235.1ContigCAJVJB000000000SAMEA8949064
08_A_13_2_1
GCA_911104215.1ContigCAJVKS000000000SAMEA8949143
16_A_3_2_1
GCA_911104265.1ContigCAJVJM000000000SAMEA8949101
09_A_8_1_1
GCA_911104155.1ContigCAJVKF000000000SAMEA8949080
4_A_26_2_2
GCA_911104255.1ContigCAJVKR000000000SAMEA8949144
16_A_9_4_4
GCA_911104175.1ContigCAJVIV000000000SAMEA8949083
04_A_26_2_1
GCA_911104285.1ContigCAJVKM000000000SAMEA8949129
12_A_16_2_1
GCA_911104195.1ContigCAJVKC000000000SAMEA8949087
05_A_7_3_1
GCA_911104325.1ContigCAJVKL000000000SAMEA8949123
11_A_12_2_1
GCA_911104295.1ContigCAJVJI000000000SAMEA8949078
4_A_8_5_1
GCA_911104275.1ContigCAJVKK000000000SAMEA8949066
08_A_26_1_2
GCA_911104165.1ContigCAJVJT000000000SAMEA8949137
14_A_17_2_4
GCA_911104095.1ContigCAJVJU000000000SAMEA8949156
19_A_1_1_4
GCA_911103925.1ContigCAJVJP000000000SAMEA8949105
09_A_12_4_2
GCA_911104105.1ContigCAJVKE000000000SAMEA8949065
08_A_24_1_2
GCA_911103915.1ContigCAJVJK000000000SAMEA8949125
18_B_26_0_1
GCA_911104015.1ContigCAJVKT000000000SAMEA8949102
09_A_8_2_1
GCA_911103865.1ContigCAJVJD000000000SAMEA8949076
4_A_3_3_1
GCA_911104055.1ContigCAJVJX000000000SAMEA8949115
09_A_20_3_3
GCA_911103895.1ContigCAJVIX000000000SAMEA8949069
03_A_4_5_5
GCA_911104005.1ContigCAJVKA000000000SAMEA8949055
06_A_27_1_1
GCA_911103875.1ContigCAJVJW000000000SAMEA8949147
16_A_30_1_1
GCA_911104065.1ContigCAJVJJ000000000SAMEA8949068
03_A_4_1_4
GCA_911104075.1ContigCAJVIY000000000SAMEA8949081
4_A_2_5_3
GCA_911104135.1ContigCAJVJN000000000SAMEA8949112
09_A_18_3_1
GCA_911103965.1ContigCAJVIW000000000SAMEA8949090
04_A_16_1_5
GCA_911103845.1ContigCAJVKI000000000SAMEA8949050
06_A_23_1_1
GCA_911103975.1ContigCAJVKO000000000SAMEA8949094
04_A_3_5_2
GCA_911104045.1ContigCAJVJL000000000SAMEA8949108
09_A_14_4_1
GCA_911103995.1ContigCAJVJE000000000SAMEA8949070
03_A_6_2_4
GCA_911104145.1ContigCAJVKH000000000SAMEA8949057
07_A_4_2_1
GCA_911103955.1ContigCAJVJF000000000SAMEA8949153
18_B_11_4_3
GCA_911103985.1ContigCAJVKQ000000000SAMEA8949099
09_A_6_5_3
GCA_911104125.1ContigCAJVJQ000000000SAMEA8949138
14_A_21_1_1
GCA_911103905.1ContigCAJVJR000000000SAMEA8949077
03_A_12_5_5
GCA_911104115.1ContigCAJVKJ000000000SAMEA8949107
09_A_13_1_2
GCA_911103945.1ContigCAJVJO000000000SAMEA8949074
06_A_16_1_1
GCA_911104085.1ContigCAJVJS000000000SAMEA8949146
16_A_22_4_3
GCA_911103935.1ContigCAJVJA000000000SAMEA8949056
07_A_3_3_1
GCA_911104025.1ContigCAJVJZ000000000SAMEA8949110
09_A_15_4_3
GCA_911103855.1ContigCAJVKP000000000SAMEA8949150
17_B_16_3_4
GCA_911104035.1ContigCAJVKN000000000SAMEA8949113
09_A_19_3_1
GCA_911103885.1ContigCAJVKB000000000SAMEA8949059
7_A_11_4_1
GCA_911103685.1ContigCAJVIP000000000SAMEA8949079
4_A_13_3_2
GCA_911103775.1ContigCAJVIA000000000SAMEA8949127
12_A_1_4_1
GCA_911103735.1ContigCAJVGU000000000SAMEA8949061
7_A_18_3_1
GCA_911103715.1ContigCAJVHB000000000SAMEA8949111
09_A_16_2_1
GCA_911103755.1ContigCAJVHW000000000SAMEA8949071
03_A_6_4_4
GCA_911103825.1ContigCAJVIO000000000SAMEA8949157
19_A_10_3_4
GCA_911103795.1ContigCAJVIT000000000SAMEA8949118
10_A_11_4_5
GCA_911103815.1ContigCAJVHF000000000SAMEA8949117
10_A_7_1_1
GCA_911103745.1ContigCAJVII000000000SAMEA8949145
16_A_19_4_5
GCA_911103705.1ContigCAJVIR000000000SAMEA8949048
5_A_29_3_1
GCA_911103805.1ContigCAJVHT000000000SAMEA8949140
15_A_3_1_1
GCA_911103765.1ContigCAJVGP000000000SAMEA8949088
05_A_1_5_1
GCA_911103725.1ContigCAJVGS000000000SAMEA8949155
18_B_24_1_1
GCA_911103675.1ContigCAJVID000000000SAMEA8949095
08_A_30_2_1
GCA_911103835.1ContigCAJVIB000000000SAMEA8949114
09_A_20_4_2
GCA_911103695.1ContigCAJVIE000000000SAMEA8949092
05_A_12_2_2
GCA_911103785.1ContigCAJVHN000000000SAMEA8949149
17_B_13_2_2
GCA_911103525.1ContigCAJVHQ000000000SAMEA8949133
13_A_12_3_1
GCA_911103605.1ContigCAJVGT000000000SAMEA8949072
03_A_17_5_3
GCA_911103535.1ContigCAJVHU000000000SAMEA8949097
09_A_2_3_2
GCA_911103585.1ContigCAJVHZ000000000SAMEA8949103
09_A_9_1_1
GCA_911103625.1ContigCAJVHH000000000SAMEA8949075
4_A_2_2_1
GCA_911103495.1ContigCAJVHE000000000SAMEA8949067
03_A_2_2_5
GCA_911103615.1ContigCAJVGZ000000000SAMEA8949152
18_B_3_4_1
GCA_911103565.1ContigCAJVHI000000000SAMEA8949151
17_B_23_3_1
GCA_911103645.1ContigCAJVGW000000000SAMEA8949135
13_A_24_1_1
GCA_911103595.1ContigCAJVGQ000000000SAMEA8949060
7_A_16_2_5
GCA_911103545.1ContigCAJVIG000000000SAMEA8949100
09_A_7_1_1
GCA_911103655.1ContigCAJVGO000000000SAMEA8949136
14_A_12_3_1
GCA_911103505.1ContigCAJVIJ000000000SAMEA8949130
12_A_26_5_1
GCA_911103555.1ContigCAJVHK000000000SAMEA8949139
14_A_29_4_1
GCA_911103665.1ContigCAJVIK000000000SAMEA8949051
06_A_23_4_1
GCA_911103635.1ContigCAJVGR000000000SAMEA8949109
09_A_15_1_1
GCA_911103575.1ContigCAJVIF000000000SAMEA8949154
18_B_20_2_1
GCA_911103515.1ContigCAJVHP000000000SAMEA8949119
10_A_24_4_1
GCA_911103395.1ContigCAJVIU000000000SAMEA8949104
09_A_9_2_1
GCA_911103475.1ContigCAJVHX000000000SAMEA8949122
11_A_11_2_1
GCA_911103465.1ContigCAJVHS000000000SAMEA8949148
17_B_4_1_1
GCA_911103405.1ContigCAJVHL000000000SAMEA8949124
11_A_13_5_5
GCA_911103435.1ContigCAJVGY000000000SAMEA8949049
6_A_11_1_1
GCA_911103415.1ContigCAJVHG000000000SAMEA8949116
10_A_1_3_5
GCA_911103425.1ContigCAJVIN000000000SAMEA8949131
12_A_29_1_1
GCA_911103455.1ContigCAJVIQ000000000SAMEA8949063
08_A_7_1_1
GCA_911103485.1ContigCAJVHO000000000SAMEA8949084
04_A_15_5_1
GCA_911103445.1ContigCAJVIM000000000SAMEA8949054
06_A_26_4_1
GCA_911103365.1ContigCAJVIH000000000SAMEA8949096
09_A_2_2_2
GCA_911103305.1ContigCAJVHR000000000SAMEA8949082
4_A_17_4_1
GCA_911103285.1ContigCAJVHY000000000SAMEA8949062
08_A_3_2_3
GCA_911103275.1ContigCAJVHA000000000SAMEA8949128
12_A_10_1_1
SRA Data Details
ParameterValue
Data volume, Gbases122
Data volume, Mbytes68699

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    VTECOneHealth
    An investigation on the carriage and characteristics of Shiga-toxin producing Escherichia coli in the recto-anal junction of sheep presented for slaughter in Ireland
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