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1.

Genome-wide DNA Methylation Patterns in Daphnia magna Reveal Targeting to 5’ Exons

Taxonomy:
Daphnia magna
Project data type: Epigenomics
Scope:
Multiisolate
University of California, Los Angeles
Accession:
PRJNA1113546
ID:
1113546
2.

Mus musculus

RNA-Seq analysis of kidney from female 5/6Nx B6 mice and female sham B6 mice

Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Monoisolate
Nephrology and Laboratory Medicine, Kanazawa university
Accession:
PRJDB15715
ID:
1104013
4.

Alteration of gene expression in ubr-5(-) and pabp-2(RNAi)

Taxonomy:
Caenorhabditis elegans
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Weaver, Pharmacology, University of Texas Southwestern Medical Center
Accession:
PRJNA1089166
ID:
1089166
5.

Populus alba x Populus grandidentata cultivar:P39

Populus alba x grandidentata P39 transcriptome - Qsub-5-10_Bark_whole_D

Taxonomy:
Populus alba x Populus grandidentata
Project data type: Transcriptome or Gene expression
Scope:
Monoisolate
DOE Joint Genome Institute
Accession:
PRJNA1069130
ID:
1069130
6.

Populus alba x Populus grandidentata cultivar:P39

Populus alba x grandidentata P39 transcriptome - Qsub-5-10_Phloem_whole_D

Taxonomy:
Populus alba x Populus grandidentata
Project data type: Transcriptome or Gene expression
Scope:
Monoisolate
DOE Joint Genome Institute
Accession:
PRJNA1069129
ID:
1069129
7.

Populus alba x Populus grandidentata cultivar:P39

Populus alba x grandidentata P39 transcriptome - Qsub-5-10_Xylem_bottom_D

Taxonomy:
Populus alba x Populus grandidentata
Project data type: Transcriptome or Gene expression
Scope:
Monoisolate
DOE Joint Genome Institute
Accession:
PRJNA1069128
ID:
1069128
8.

Populus alba x Populus grandidentata cultivar:P39

Populus alba x grandidentata P39 transcriptome - Qsub-5-10_Xylem_middle_D

Taxonomy:
Populus alba x Populus grandidentata
Project data type: Transcriptome or Gene expression
Scope:
Monoisolate
DOE Joint Genome Institute
Accession:
PRJNA1069127
ID:
1069127
9.

Populus alba x Populus grandidentata cultivar:P39

Populus alba x grandidentata P39 transcriptome - Qsub-5-10_Xylem_top_D

Taxonomy:
Populus alba x Populus grandidentata
Project data type: Transcriptome or Gene expression
Scope:
Monoisolate
DOE Joint Genome Institute
Accession:
PRJNA1069126
ID:
1069126
10.

Transcriptional profiling of CD11b+ microglia isolated from cerebellum and olfactory bulb-removed brains of SAMP8 and SAMR1 mice at 2, 5, and 9 months of age.

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Other
Scope:
Multiisolate
VIB Single cell core, VIB
Accession:
PRJNA1066315
ID:
1066315
11.

Oryza sativa ssp. japonica (Kitaake) stressed by cold stress (5°C, 24 h) targeted to leaves (C-L), roots (C-R) or the whole plant (C), and exposed to previous acclimation (15°C, 12 h)

Organism:
Oryza sativa
Taxonomy:
Oryza sativa (Asian cultivated rice)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Lab. of hormonal regulations in plants, Institute of Experimenal Botany of the Czech Academy of Sciences
Accession:
PRJNA1031650
ID:
1031650
12.

mRNA transcript levels in E15.5, E17.5 and P1 Crb1KOCrb2ΔRPC against Crb1KO neuroretina, and in E15.5 Crb1KOCrb2ΔRPC against wild type neuroretina

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Wijnholds, Ophthalmology, Leiden University Medical Center
Accession:
PRJNA999329
ID:
999329
13.

Single-cell RNA sequencing of mouse forebrain cells 5 weeks after injections of a control AAV9 or a VEGF-C/D trap AAV9

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Mayo Clinic
Accession:
PRJNA962187
ID:
962187
14.

Gut-derived metabolites mediating cognitive development in 5 years old children: early-life transplant in mice has lasting effects throughout adulthood

Project data type: Raw sequence reads
Scope:
Multispecies
University of Bologna
Accession:
PRJNA956738
ID:
956738
15.

ADAR1 Zα domain P195A mutation activates the MDA-5 dependent RNA-sensing signaling pathway in the brain enhanced by haploinsufficiency without overall RNA editing level decrease.

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Pathology, University of Pittsburgh
Accession:
PRJNA956522
ID:
956522
16.

Combined transcriptome and T cell receptor alpha/beta (TRA/TRB) single cell RNA sequencing of donor-reactive T cells in stable kidney transplant recipients before and 3-5 years post-transplant.

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Internal Medicine, Erasmus MC
Accession:
PRJNA912159
ID:
912159
17.

Saccharomyces cerevisiae

Restricting synthesis of heterologous phosphoribulokinase and ribulose-1,5-bisphosphatase mitigates byproduct formation during slow growth of engineered low-glycerol-producing Saccharomyces cerevisiae strains

Taxonomy:
Saccharomyces cerevisiae (brewer's yeast)
Project data type: Raw sequence reads
Scope:
Multiisolate
Delft University of Technology
Accession:
PRJNA904552
ID:
904552
18.

Gene expression profiling in hepatocellular carcinoma cell lines PRC/PRF/5 and SNU-449 after a treatment with Transforming Growth Factor beta (TGF-beta) and Galunisertib, alone or in combination

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
COSS, U1242, INSERM
Accession:
PRJNA872161
ID:
872161
19.

ddRAD sequencing of 5 turtles

Project data type: Raw sequence reads
Scope:
Multispecies
Leibniz Institute for Zoo and Wildlife Research
Accession:
PRJNA862341
ID:
862341
20.

TRIM28 modulates progesterone and estrogne signaling in endometrium [mouseD3.5-RNAseq-mm10]

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
NIEHS
Accession:
PRJNA845802
ID:
845802

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