Bacteria (ID 474907) - BioProject

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Accession: PRJNA474907 ID: 474907

Bacteria

Genome sequencing and assembly - library of cultured bacterial species from laboratory mouse gut microbiota from the University of Toronto

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This project is a component of the The Lactobacillus genus, a use case for Bactopia.

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216 additional projects are components of the The Lactobacillus genus, a use case for Bactopia..

Bank of bacterial mono-isolates from laboratory mouse gut microbiota

Accession	PRJNA474907
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 14-Apr-2019 University of Toronto
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	4275
WGS master	46
SRA Experiments	46
Protein Sequences	120463
Other datasets
BioSample	47
Assembly	46

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

46
46

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_004801615.1	SSTJ00000000	SAMN11366399	NM80_B27	Adlercreutzia caecimuris
GCA_009767905.1	WSRR00000000	SAMN13322329	NM66_B29	Adlercreutzia mucosicola
GCA_004801755.1	SSTL00000000	SAMN11366397	NM76_A32	Bacteroidales bacterium
GCA_004794035.2	SRZD00000000	SAMN10878315	NM74_B14	Bacteroidales bacterium
GCA_004794095.1	SRZA00000000	SAMN10878312	NM70_E10	Bacteroides acidifaciens
GCA_004793675.1	SRYX00000000	SAMN10878309	NM63_1-25	Bacteroides caecimuris
GCA_004801645.1	SSTN00000000	SAMN11366394	NM45_B5	Bacteroides faecichinchillae
GCA_004793475.1	SRYZ00000000	SAMN10878311	NM69_E16B	Bacteroides muris (ex Afrizal et al. 2022)
GCA_004801625.1	SSTF00000000	SAMN11366404	NM87_A27A	Bifidobacterium pseudolongum
GCA_009767885.1	WSRQ00000000	SAMN13322330	NM79_F5	Clostridium chromiireducens
GCA_004793785.1	SRYQ00000000	SAMN10878302	NM49_B9-7	Clostridium perfringens
GCA_004794105.1	SRYR00000000	SAMN10878303	NM50_B9-20	Clostridium sartagoforme
GCA_004793665.1	SRYF00000000	SAMN10878291	NM08_P-01	Coriobacteriaceae bacterium
GCA_004793885.1	SRYG00000000	SAMN10878292	NM09_H32	Dubosiella muris
GCA_004793935.1	SRYT00000000	SAMN10878305	NM58_B2-5	Enterococcus faecalis
GCA_004793905.1	SRYS00000000	SAMN10878304	NM56_O-09	Enterococcus hirae
GCA_004793465.1	SRYC00000000	SAMN10878288	NM05_H27	Enterorhabdus sp. NM05_H27
GCA_004801725.1	SSTH00000000	SAMN11366402	NM84_B9-29	Escherichia coli
GCA_004793585.1	SRZB00000000	SAMN10878313	NM72_1-8	Hominisplanchenecus murintestinalis
GCA_004801715.1	SSTO00000000	SAMN11366393	NM43_TS4-1	Klebsiella variicola
GCA_004793775.1	SRYV00000000	SAMN10878307	NM61_E11	Lactobacillus intestinalis
GCA_004793575.1	SRYU00000000	SAMN10878306	NM60_B2-8	Lactobacillus johnsonii
GCA_004793975.1	SRYB00000000	SAMN10878287	NM04_E33	Lepagella muris
GCA_004793535.1	SRYK00000000	SAMN10878296	NM26_J9	Ligilactobacillus murinus
GCA_004793755.1	SRYL00000000	SAMN10878297	NM28_3M-8	Ligilactobacillus murinus
GCA_004793875.1	SRYH00000000	SAMN10878293	NM11_1-41	Limosilactobacillus reuteri
GCA_004794115.1	SRYI00000000	SAMN10878294	NM12_1-47	Limosilactobacillus reuteri
GCA_004794085.1	SRYO00000000	SAMN10878300	NM46_B2-13	Microbacterium laevaniformans
GCA_004801705.1	SSTK00000000	SAMN11366398	NM77_A26	Muribaculaceae bacterium
GCA_004801635.1	SSTG00000000	SAMN11366403	NM86_A22	Muribaculum caecicola
GCA_004793655.1	SRYD00000000	SAMN10878289	NM06_A21	Muribaculum intestinale
GCA_004792675.1	SRVL00000000	SAMN10878316	NM75_1-48a	Muribaculum intestinale
GCA_009856815.1	WVUM00000000	SAMN10878286	NM03_1-53	Muribaculum intestinale
GCA_004793735.1	SRYY00000000	SAMN10878310	NM65_B17	Muribaculum sp. NM65_B17
GCA_004793925.1	SRYE00000000	SAMN10878290	NM07_P-09	Muricaecibacterium torontonense
GCA_004792655.1	SRZC00000000	SAMN10878314	NM73_A23	Palleniella muris
GCA_004793765.1	SRYM00000000	SAMN10878298	NM39_I3	Parabacteroides distasonis
GCA_009767915.1	WSRP00000000	SAMN11366400	NM82_D38	Parasutterella muris
GCA_005046025.1	SSTM00000000	SAMN11366395	NM48_B13	Parvibacter caecicola
GCA_004793545.1	SRYA00000000	SAMN10878285	NM01_1-7b	Petralouisia muris
GCA_004793835.1	SRYJ00000000	SAMN10878295	NM22_B1	Phocaeicola sartorii
GCA_004793845.1	SRYP00000000	SAMN10878301	NM47_B9-13	Propionibacterium sp. NM47_B9-13
GCA_004793515.1	SRYN00000000	SAMN10878299	NM44_TS2-9	Rodentibacter caecimuris
GCA_004801655.1	SSTI00000000	SAMN11366401	NM83_B4-11	Sphingomonas olei
GCA_004794075.1	SRYW00000000	SAMN10878308	NM62_B4-13	Stenotrophomonas maltophilia
GCA_009767945.1	WSRS00000000	SAMN11366396	NM51_B2-22	Streptococcus danieliae

SRA Data Details

Parameter	Value
Data volume, Gbases	155
Data volume, Mbytes	48818

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Bacteria

Genome sequencing and assembly - library of cultured bacterial species from laboratory mouse gut microbiota from the University of Toronto

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