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Our primary goal is to coordinate or facilitate generation of high-quality, nearly complete reference genomes for all cetacean species, to maximize the utility of cetacean genomic data for research and conservation. To meet this goal, we have adopted the Vertebrate Genome Project's (VGP) minimum genome quality metrics, but also support draft genome sequencing for species for which high-quality samples or sequencing resources are not available.
| Accession | PRJNA1020146 |
| Type | Umbrella project |
| Publications (total 4) Less... | - Published online: Morin P et al., "Building genomic infrastructure: Sequencing platinum-standard reference-quality genomes of all cetacean species", Marine Mammal Science, 2020;36(4):1356-1366
- Published online: Morin P et al., "Reference genome and demographic history of the most endangered marine mammal, the vaquita", Molecular Ecology Resources, 2020;21(4):1008-1020
- Published online: Paez S et al., "Reference genomes for conservation", Science, 2022;377(6604):364-366
- Published online: Bukhman Y et al., "A high-quality blue whale genome, segmental duplications, and historical demography", Research Square, 2022;
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| Submission | Registration date: 22-Sep-2023
Earth BioGenome Project |
| Related Resources | |
| Relevance | Evolution |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 893196 |
| WGS master | 41 |
| Genomic DNA | 253 |
| Transcript | 884079 |
| SRA Experiments | 236 |
| Protein Sequences | 753432 |
| Publications |
| PubMed | 8 |
| PMC | 3 |
| Other datasets |
| BioSample | 41 |
| Assembly | 41 |
This project encompasses the following 24 sub-projects:
| Project Type | Number of Projects |
| Umbrella project | 24 |
BioProject
accession | Organism | Title |
|---|
| PRJEB60647 | Balaenoptera acutorostrata | Balaenoptera acutorostrata (minke whale) (WELLCOME SANGER INSTITUTE) | | PRJEB76369 | Balaenoptera borealis | Balaenoptera borealis (sei whale) (WELLCOME SANGER INSTITUTE) | | PRJNA557693 | Balaenoptera musculus | Balaenoptera musculus (blue whale) genome assembly, mBalMus1 (G10K) | | PRJEB76339 | Balaenoptera physalus | Balaenoptera physalus (fin whale) (WELLCOME SANGER INSTITUTE) | | PRJNA927325 | Balaenoptera ricei | Balaenoptera ricei (Rice's whale) for VGP genome, mBalRic1 (Vertebrate Genomes Project) | | PRJEB60667 | Delphinus delphis | Delphinus delphis (saddleback dolphin) (WELLCOME SANGER INSTITUTE) | | PRJNA927345 | Eschrichtius robustus | Eschrichtius robustus (grey whale) for VGP reference genome, mEscRob2 (Vertebrate Genomes Project) | | PRJNA932450 | Eubalaena glacialis | Eubalaena glacialis (North Atlantic right whale) genome, mEubGla1 (Vertebrate Genomes Project) | | PRJEB64971 | Globicephala melas | Globicephala melas (long-finned pilot whale) (WELLCOME SANGER INSTITUTE) | | PRJEB75720 | Grampus griseus | Grampus griseus (Risso's dolphin) (WELLCOME SANGER INSTITUTE) | | PRJEB60010 | Hyperoodon ampullatus | Hyperoodon ampullatus (northern bottlenose whale) (WELLCOME SANGER INSTITUTE) | | PRJNA1067659 | Inia geoffrensis | Inia geoffrensis (Amazon river dolphin) genome, mIniGeo1 (Cetaceans Genome Project) | | PRJNA903912 | Kogia breviceps | Kogia breviceps (Pygmy sperm whale) genome, mKogBre1 (Vertebrate Genomes Project) | | PRJEB77312 | Lagenorhynchus acutus | Lagenorhynchus acutus (Atlantic white-sided dolphin) (WELLCOME SANGER INSTITUTE) | | PRJEB60663 | Lagenorhynchus albirostris | Lagenorhynchus albirostris (white-beaked dolphin) (WELLCOME SANGER INSTITUTE) | | PRJEB73687 | Mesoplodon bidens | Mesoplodon bidens (Sowerby's beaked whale) (WELLCOME SANGER INSTITUTE) | | PRJNA875937 | Mesoplodon densirostris | Mesoplodon densirostris (Blainville's beaked whale) assembly, mMesDen1 (Vertebrate Genomes Project) | | PRJEB79281 | Mesoplodon mirus | Mesoplodon mirus (True's beaked whale) (WELLCOME SANGER INSTITUTE) | | PRJEB51334 | Orcinus orca | Orcinus orca (killer whale) (WELLCOME SANGER INSTITUTE) | | PRJEB71542 | Phocoena phocoena | Phocoena phocoena (harbor porpoise) (WELLCOME SANGER INSTITUTE) | | PRJNA560233 | Phocoena sinus | Phocoena sinus (Vaquita) genome assembly, mPhoSin1 (Vertebrate Genomes Project) | | PRJNA1112839 | Pseudorca crassidens | Pseudorca crassidens (false killer whale) genome, mPseCra1 (Vertebrate Genomes Project) | | PRJEB60665 | Stenella coeruleoalba | Stenella coeruleoalba (striped dolphin) (WELLCOME SANGER INSTITUTE) | | PRJNA562249 | Tursiops truncatus | Tursiops truncatus (bottlenose dolphin) genome, mTurTru1 (Vertebrate Genomes Project) |
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