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ASM863837v1

Organism name:
Nyssa sinensis (eudicots)
Isolate:
J267
BioSample:
SAMN12206538
BioProject:
PRJNA552378
Submitter:
Nyssa sinensis
Date:
2019/09/24
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_008638375.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
VIRR01
Assembly method:
FALCON v. 3.1
Expected final version:
yes
Genome coverage:
99.12x
Sequencing technology:
PacBio Sequel

IDs: 4721031 [UID] 14068088 [GenBank]

See Genome Information for Nyssa sinensis

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length1,001,447,681
Total ungapped length1,001,411,681
Gaps between scaffolds360
Number of scaffolds654
Scaffold N503,599,157
Scaffold L5077
Number of contigs654
Contig N503,599,157
Contig L5077
Total number of chromosomes and plasmids22
Number of component sequences (WGS or clone)654

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_008638385.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Linkage Group LG0CM018031.1n/an/a0
Linkage Group LG1CM018032.1n/an/a0
Linkage Group LG2CM018043.1n/an/a0
Linkage Group LG3CM018046.1n/an/a0
Linkage Group LG4CM018047.1n/an/a0
Linkage Group LG5CM018048.1n/an/a0
Linkage Group LG6CM018049.1n/an/a0
Linkage Group LG7CM018050.1n/an/a0
Linkage Group LG8CM018051.1n/an/a0
Linkage Group LG9CM018052.1n/an/a0
Linkage Group LG10CM018033.1n/an/a0
Linkage Group LG11CM018034.1n/an/a0
Linkage Group LG12CM018035.1n/an/a0
Linkage Group LG13CM018036.1n/an/a0
Linkage Group LG14CM018037.1n/an/a0
Linkage Group LG15CM018038.1n/an/a0
Linkage Group LG16CM018039.1n/an/a0
Linkage Group LG17CM018040.1n/an/a0
Linkage Group LG18CM018041.1n/an/a0
Linkage Group LG19CM018042.1n/an/a0
Linkage Group LG20CM018044.1n/an/a0
Linkage Group LG21CM018045.1n/an/a0
unplacedn/an/an/a272

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All1,001,447,6816541,001,411,6813,599,1570360
Linkage Group LG065,168,4172165,166,4176,410,062020
Linkage Group LG163,643,8901863,642,1908,324,631017
Linkage Group LG260,401,8142860,399,1143,289,760027
Linkage Group LG358,107,2703058,104,3703,325,032029
Linkage Group LG455,885,2752155,883,2754,329,324020
Linkage Group LG556,605,6093256,602,5092,534,345031
Linkage Group LG648,351,3962548,348,9962,372,642024
Linkage Group LG746,966,9562946,964,1561,746,899028
Linkage Group LG842,310,3861642,308,8864,237,296015
Linkage Group LG943,841,8321043,840,9325,632,52109
Linkage Group LG1043,339,3051343,338,1055,380,283012
Linkage Group LG1140,620,3591440,619,0594,361,550013
Linkage Group LG1239,871,6771239,870,5774,203,520011
Linkage Group LG1337,413,0081637,411,5083,286,723015
Linkage Group LG1437,867,720337,867,52030,063,64502
Linkage Group LG1536,478,5561436,477,2563,480,530013
Linkage Group LG1636,926,3291236,925,2298,580,249011
Linkage Group LG1732,544,8892232,542,7891,667,863021
Linkage Group LG1833,277,7141133,276,7144,454,468010
Linkage Group LG1932,911,9091632,910,4093,015,685015
Linkage Group LG2030,040,2061230,039,1065,412,678011
Linkage Group LG2125,950,872725,950,2726,221,05406
unplaced32,922,29227232,922,292266,66700