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Source database (GenBank or RefSeq) File type

ASM328659v3

Organism name:: Aerococcus mictus (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: UMB3440
BioSample:: SAMN08895450
BioProject:: PRJNA316969
Submitter:: Loyola University Chicago
Date:: 2023/08/25
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_003286595.3 (latest)
RefSeq assembly accession:: GCF_003286595.3 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: SPAdes v. SPAdes-3.15.4
Expected final version:: yes
Genome coverage:: 464x
Sequencing technology:: Nanopore; Illumina

IDs: 18229361 [UID] 46578078 [GenBank] 47065778 [RefSeq]

See Genome Information for Aerococcus mictus

Pathogen Detection Resources

There are 45 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003286595.3	=	GCF_003286595.3	ASM328659v3	Complete Genome	Latest GenBank, Latest RefSeq
GCA_003286595.2	=	GCF_003286595.2	ASM328659v2	Contig	Replaced GenBank, Replaced RefSeq
GCA_003286595.1	=	GCF_003286595.1	ASM328659v1	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::10/08/2023 12:45:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,946
CDSs (total)::1,870
Genes (coding)::1,855
CDSs (with protein)::1,855
Genes (RNA)::76
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::60
ncRNAs::4
Pseudo Genes (total)::15
CDSs (without protein)::15
Pseudo Genes (ambiguous residues)::0 of 15
Pseudo Genes (frameshifted)::8 of 15
Pseudo Genes (incomplete)::8 of 15
Pseudo Genes (internal stop)::4 of 15
Pseudo Genes (multiple problems)::3 of 15
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,125,064
Total ungapped length	2,125,064
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP132985.1	=	NZ_CP132985.1
Plasmid unnamed1	CP132986.1	=	NZ_CP132986.1

Molecule	Total Length
All	2,125,064
Chromosome	2,117,296
Plasmid unnamed1	7,768

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	92.28	81.34	87.56

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ASM328659v3

See Genome Information for Aerococcus mictus

Pathogen Detection Resources

There are 45 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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