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ASM328659v2

Organism name:
Aerococcus urinae (firmicutes)
Infraspecific name:
Strain: UMB3440
BioSample:
SAMN08895450
BioProject:
PRJNA316969
Submitter:
Loyola University Chicago
Date:
2023/06/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003286595.2 (replaced)
RefSeq assembly accession:
GCF_003286595.2 (replaced)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QMHH02
Assembly method:
SPAdes v. SPAdes-3.15.4
Expected final version:
yes
Genome coverage:
464x
Sequencing technology:
Nanopore; Illumina

IDs: 16940971 [UID] 43517058 [GenBank] 43682228 [RefSeq]

See Genome Information for Aerococcus urinae

There are 77 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
This WGS project has been superseded by the complete genome in (non-WGS) GenBank records CP132985, CP132986

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/13/2023 14:55:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,944
CDSs (total)::1,868
Genes (coding)::1,853
CDSs (with protein)::1,853
Genes (RNA)::76
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::60
ncRNAs::4
Pseudo Genes (total)::15
CDSs (without protein)::15
Pseudo Genes (ambiguous residues)::0 of 15
Pseudo Genes (frameshifted)::10 of 15
Pseudo Genes (incomplete)::6 of 15
Pseudo Genes (internal stop)::5 of 15
Pseudo Genes (multiple problems)::4 of 15
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,125,064
Total ungapped length2,125,064
Number of contigs2
Contig N502,117,296
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,125,06422,125,0642,117,29600