U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM20616v1

Organism name:
epibiont metagenome (metagenomes)
BioSample:
SAMN02954288
BioProject:
PRJNA17241
Submitter:
University of Delaware/Desert Research Institute
Date:
2008/11/12
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • fragmented assembly
  • genus undefined
  • metagenome
GenBank assembly accession:
GCA_000206165.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AAUQ01

IDs: 268508 [UID] 268508 [GenBank]

History (Show revision history)

Comment

Epibionts from a single Alvinella pompejana polychaete worm provided the source DNA for a shotgun library with 2-4kb inserts. This polychaete was collected from the Bio9 vent, at a depth of 2500m at the 9-N hydrothermal vent field on ... the East Pacific Rise where temperatures were recorded between 38-51deg C at the time of collection. PCR-amplified 16S rRNA sequences from the epibiont DNA revealed a highly constrained assemblage of almost entirely epsilonproteobacteria. Whole genome sequencing performed at SymBio Inc., assembly at Desert Research Institute. URL - http://ocean.dbi.udel.edu Contact: Alison Murray, alison.murray@dri.edu.  more

Global statistics

Total sequence length147,684,158
Total ungapped length147,684,158
Number of contigs128,934
Contig N501,246
Contig L5044,826
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)128,934

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced147,684,158128,934147,684,1581,24600