NCBI HomeSequence Set Browser
skip to main content
 

JAAVVN000000000.1 Rhizobium phaseoli

Master
# of Contigs: 487
# of Proteins: 6,556
Total length: 6,870,758 bp
BioProject: PRJNA616200
BioSample: SAMN14484490
Keywords: WGS
Annotation: Contigs
Organism: Rhizobium phaseoli – show lineagehide lineage
Bacteria, Proteobacteria, Alphaproteobacteria, Hyphomicrobiales, Rhizobiaceae, Rhizobium/Agrobacterium group, Rhizobium
Biosource:
/collected_by = CS Wekesa
/collection_date = 15-Dec-2018
/country = Kenya: Busia County
/host = Phaseolus vulgaris
/isolation_source = soil
/mol_type = genomic
/strain = S2
WGS: JAAVVN010000001:JAAVVN010000487
Reference:
Isolation and Characterization of High-Efficiency Rhizobia From Western Kenya Nodulating With Common Bean : Front Microbiol 12 (2021) In press – Wekesa,C.S., Furch,A.C.U., Oelmueller,R.
Submission:
Submitted (31-MAR-2020) Plant Physiology, Plant Physiology, Dornburgerstr. 159, Jena, Thuringia 07743, Germany – Wekesa,C.S., Oelmueller,R., Furch,A.C.

The Rhizobium phaseoli whole genome shotgun (WGS) project has the project accession JAAVVN000000000. This version of the project (01) has the accession number JAAVVN010000000, and consists of sequences JAAVVN010000001-JAAVVN010000487.

Organism name was changed from Rhizobium sp. BUS002 to Rhizobium sp. S2 (AUG-2020). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

##Genome-Annotation-Data-START##
Annotation Provider : NCBI
Annotation Date : 04/02/2020 19:37:29
Annotation Pipeline : NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method : Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision : 4.11
Features Annotated : Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total) : 6,851
CDSs (total) : 6,789
Genes (coding) : 6,556
CDSs (with protein) : 6,556
Genes (RNA) : 62
rRNAs : 1, 1, 8 (5S, 16S, 23S)
complete rRNAs : 1, 1 (5S, 16S)
partial rRNAs : 8 (23S)
tRNAs : 48
ncRNAs : 4
Pseudo Genes (total) : 233
CDSs (without protein) : 233
Pseudo Genes (ambiguous residues) : 0 of 233
Pseudo Genes (frameshifted) : 140 of 233
Pseudo Genes (incomplete) : 127 of 233
Pseudo Genes (internal stop) : 33 of 233
Pseudo Genes (multiple problems) : 59 of 233
##Genome-Annotation-Data-END##
##Genome-Assembly-Data-START##
Assembly Method : SPAdes v. 3.12.0
Genome Representation : Full
Expected Final Version : Yes
Genome Coverage : 187*x
Sequencing Technology : Illumina MiSeq
##Genome-Assembly-Data-END##
Contigs
Proteins
Download

Contigs:

GenBank:JAAVVN01.1.gbff.gz 4.6 Mb
ASN.1:JAAVVN01.1.bbs.gz 4 Mb

Proteins:

GenPept:JAAVVN01.1.gnp.gz 2.2 Mb
FASTA:JAAVVN01.1.fsa_aa.gz 1.2 Mb
History
Minor Version Create Date
0 04/08/2020
2 08/11/2020
3 09/14/2021
4 09/15/2021