JAAIMV000000000.1 Coprococcus comes
- Master
# of Contigs: 105 # of Proteins: 3,070 Total length: 3,290,570 bp BioProject: PRJNA596270 BioSample: SAMN14067762 Keywords: WGS Annotation: Contigs Organism: Coprococcus comes – show lineagehide lineage Biosource: /country = USA: New York/host = Homo sapiens/isolation_source = fecal sample/mol_type = genomic/strain = MSK.20.88WGS: JAAIMV010000001:JAAIMV010000105 Reference: Functional and Genomic Variation between Human-Derived Isolates of Lachnospiraceae Reveals Inter- and Intra-Species Diversity : Cell Host Microbe (2020) In press – show 10 authorshide authorsSorbara,M.T., Littmann,E.R., Fontana,E., Moody,T.U., Kohout,C.E., Gjonbalaj,M., Eaton,V., Seok,R., Leiner,I.M., Pamer,E.G.Submission: Submitted (10-FEB-2020) Duchossois Family Institute, University of Chicago, 900 E 57th Street, Chicago, IL 60615, USA – Littmann,E., Sorbara,M.The Coprococcus comes whole genome shotgun (WGS) project has the project accession JAAIMV000000000. This version of the project (01) has the accession number JAAIMV010000000, and consists of sequences JAAIMV010000001-JAAIMV010000105.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Annotation-Data-START## Annotation Provider : NCBI Annotation Date : 02/18/2020 16:20:24 Annotation Pipeline : NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method : Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision : 4.11 Features Annotated : Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) : 3,261 CDSs (total) : 3,196 Genes (coding) : 3,070 CDSs (with protein) : 3,070 Genes (RNA) : 65 rRNAs : 1, 2, 2 (5S, 16S, 23S) complete rRNAs : 1 (5S) partial rRNAs : 2, 2 (16S, 23S) tRNAs : 56 ncRNAs : 4 Pseudo Genes (total) : 126 CDSs (without protein) : 126 Pseudo Genes (ambiguous residues) : 0 of 126 Pseudo Genes (frameshifted) : 21 of 126 Pseudo Genes (incomplete) : 108 of 126 Pseudo Genes (internal stop) : 7 of 126 Pseudo Genes (multiple problems) : 10 of 126 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Date : 2019 Assembly Method : SPAdes v. JUN-2019 Genome Representation : Full Expected Final Version : Yes Genome Coverage : 100x Sequencing Technology : Illumina HiSeq ##Genome-Assembly-Data-END## - Contigs
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Contigs:
GenBank:JAAIMV01.1.gbff.gz 2.3 MbFASTA:JAAIMV01.1.fsa_nt.gz 994.4 kbASN.1:JAAIMV01.1.bbs.gz 2 MbProteins:
GenPept:JAAIMV01.1.gnp.gz 1.1 MbFASTA:JAAIMV01.1.fsa_aa.gz 610.1 kb