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8YGJ:
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 28-nt)
PDB ID:
8YGJ
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MMDB ID:
247986
PDB Deposition Date:
2024/2/26
Updated in MMDB:
2024/09
Experimental Method:
electron microscopy
Resolution:
3.2 Å
Source Organism:
Streptococcus pyogenes serotype M1
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Taxonomy
Molecule
Streptococcus pyogenes serotype M1
A
Moloney murine leukemia virus
E
Streptococcus pyogenes
B, C, D, F
Similar Structures:
VAST+
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Molecular Components in 8YGJ
Label
Count
Molecule
Proteins (2 molecules)
E
1
Gag-pol Polyprotein
A
1
Crispr-associated Endonuclease Cas9/csn1
Nucleotides(4 molecules)
B
1
RNA (137-mer)
C
1
DNA (51-mer)
D
1
DNA (5'-d(p*tp*gp*ap*tp*gp*gp*cp*ap*gp*ap*gp*tp*ap*cp*tp*ap*g)-3')
F
1
DNA (62-mer)
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303