8QDG: compound 1a bound KMT9 crystal structure

PDB ID: 8QDGDownload
MMDB ID: 252043
PDB Deposition Date: 2023/8/29
Updated in MMDB: 2024/09
Experimental Method:
x-ray diffraction
Resolution: 1.392  Å
Source Organism:
Similar Structures:
Biological Unit for 8QDG: dimeric; determined by author and by software (PISA)
Molecular Components in 8QDG
Label Count Molecule
Proteins (2 molecules)
1
Methyltransferase N6amt1
(Gene symbol: N6AMT1)
Molecule annotation
1
Multifunctional Methyltransferase Subunit Trm112-like Protein
(Gene symbol: TRMT112)
Molecule annotation
Chemical and Non-standard biopolymers (1 molecule)
1
1
(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[(3~{S})-pyrrolidin-3-yl]amino]-2-azanyl-butanoic acid(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[(3~{S})-pyrrolidin-3-yl]amino]-2-azanyl-butanoic acid
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303