8H8S: Bovine Heart Cytochrome c Oxidase in the Calcium-bound Fully Reduced State

PDB ID: 8H8SDownload
MMDB ID: 244446
PDB Deposition Date: 2022/10/24
Updated in MMDB: 2024/03
Experimental Method:
x-ray diffraction
Resolution: 1.7  Å
Source Organism:
Similar Structures:
Biological Unit for 8H8S: 26-meric; determined by author and by software
Molecular Components in 8H8S
Label Count Molecule
Proteins (26 molecules)
2
Cytochrome C Oxidase Subunit 1
Molecule annotation
2
Cytochrome C Oxidase Subunit 2
(Gene symbol: COX2)
Molecule annotation
2
Cytochrome C Oxidase Subunit 3
Molecule annotation
2
Cytochrome C Oxidase Subunit 4 Isoform 1, Mitochondrial
(Gene symbol: COX4I1)
Molecule annotation
2
Cytochrome C Oxidase Subunit 5A
(Gene symbol: COX5A)
Molecule annotation
2
Cytochrome C Oxidase Subunit 5B, Mitochondrial
(Gene symbol: COX5B)
Molecule annotation
2
Cytochrome C Oxidase Subunit 6a2, Mitochondrial
(Gene symbol: COX6A2)
Molecule annotation
2
Cytochrome C Oxidase Subunit 6B1
(Gene symbol: COX6B1)
Molecule annotation
2
Cytochrome C Oxidase Subunit 6C
(Gene symbol: COX6C)
Molecule annotation
2
Cytochrome C Oxidase Subunit 7A1
(Gene symbol: COX7A1)
Molecule annotation
2
Cytochrome C Oxidase Subunit 7B, Mitochondrial
(Gene symbol: COX7B)
Molecule annotation
2
Cytochrome C Oxidase Subunit 7C, Mitochondrial
(Gene symbol: COX7C)
Molecule annotation
2
Cytochrome C Oxidase Subunit 8B, Mitochondrial
(Gene symbol: COX8B)
Molecule annotation
Chemicals and Non-standard biopolymers (131 molecules)
1
4
HEME-AHEME-A
2
2
COPPER (II) IONCOPPER (II) ION
3
2
MAGNESIUM IONMAGNESIUM ION
4
2
CALCIUM IONCALCIUM ION
5
6
CARDIOLIPINCARDIOLIPIN
6
26
EICOSANEEICOSANE
7
42
DECYL-BETA-D-MALTOPYRANOSIDEDECYL-BETA-D-MALTOPYRANOSIDE
8
29
1,2-ETHANEDIOL1,2-ETHANEDIOL
9
4
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
10
2
DINUCLEAR COPPER IONDINUCLEAR COPPER ION
11
6
CHOLIC ACIDCHOLIC ACID
12
2
Molecule information is not available.
13
2
ZINC IONZINC ION
14
2
(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303