7D2Z: Structure of sybody SR31 in complex with the SARS-CoV-2 S Receptor Binding domain (RBD)

PDB ID: 7D2ZDownload
MMDB ID: 198959
PDB Deposition Date: 2020/9/17
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 1.97  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 7D2Z: dimeric; determined by author and by software (PISA)
Molecular Components in 7D2Z
Label Count Molecule
Proteins (2 molecules)
1
Sr31 Against Sars-cov-2 Rbd, NON Neutralizing
Molecule annotation
1
Spike Protein S1
Molecule annotation
Chemicals and Non-standard biopolymers (27 molecules)
1
2
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
beta-D-mannopyranosebeta-D-mannopyranose
3
2
alpha-D-mannopyranosealpha-D-mannopyranose
4
2
alpha-L-fucopyranosealpha-L-fucopyranose
5
13
FORMIC ACIDFORMIC ACID
6
5
GLYCEROLGLYCEROL
7
2
ACETATE IONACETATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303