6Z5R: RC-LH1(16) complex from Rhodopseudomonas palustris

PDB ID: 6Z5RDownload
MMDB ID: 197464
PDB Deposition Date: 2020/5/27
Updated in MMDB: 2024/10
Experimental Method:
electron microscopy
Resolution: 2.8  Å
Source Organism:
Similar Structures:
Biological Unit for 6Z5R: 35-meric; determined by author
Molecular Components in 6Z5R
Label Count Molecule
Proteins (35 molecules)
16
Light-harvesting Complex 1 Alpha Chain
Molecule annotation
16
Light-harvesting Complex 1 Beta Chain
Molecule annotation
1
H Subunit of Photosynthetic Reaction Center Complex
Molecule annotation
1
Reaction Center Protein L Chain
Molecule annotation
1
Reaction Center Protein M Chain
Molecule annotation
Chemicals and Non-standard biopolymers (105 molecules)
1
36
BACTERIOCHLOROPHYLL ABACTERIOCHLOROPHYLL A
2
16
SPIRILLOXANTHINSPIRILLOXANTHIN
3
24
(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE
4
6
CARDIOLIPINCARDIOLIPIN
5
12
DODECYL-BETA-D-MALTOSIDEDODECYL-BETA-D-MALTOSIDE
6
2
BACTERIOPHEOPHYTIN ABACTERIOPHEOPHYTIN A
7
5
UBIQUINONE-10UBIQUINONE-10
8
1
FE (III) IONFE (III) ION
9
1
(6~{R},10~{S},14~{R},19~{R},23~{S},24~{E},27~{S},28~{E})-2,6,10,14,19,23,27,31-octamethyldotriaconta-24,28-dien-2-ol(6~{R},10~{S},14~{R},19~{R},23~{S},24~{E},27~{S},28~{E})-2,6,10,14,19,23,27,31-octamethyldotriaconta-24,28-dien-2-ol
10
2
(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303