6YOV: OCT4-SOX2-bound nucleosome - SHL+6

PDB ID: 6YOVDownload
MMDB ID: 187345
PDB Deposition Date: 2020/4/15
Updated in MMDB: 2020/07
Experimental Method:
electron microscopy
Resolution: 3.42  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 6YOV: dodecameric; determined by author
Molecular Components in 6YOV
Label Count Molecule
Proteins (10 molecules)
1
Histone H3.1
Molecule annotation
1
Histone H4
Molecule annotation
2
Histone H2A Type 1-b/e
Molecule annotation
2
Histone H2B Type 1-J
Molecule annotation
1
Histone H3.1
Molecule annotation
1
Histone H4
Molecule annotation
1
Green Fluorescent Protein,pou Domain, Class 5, Transcription Factor 1
Molecule annotation
1
Transcription Factor Sox-2
Molecule annotation
Nucleotides(2 molecules)
2
DNA (142-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
8
PENTANEDIALPENTANEDIAL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303