6YEZ: Plant PSI-ferredoxin-plastocyanin supercomplex

PDB ID: 6YEZDownload
MMDB ID: 204227
PDB Deposition Date: 2020/3/25
Updated in MMDB: 2024/10
Experimental Method:
electron microscopy
Resolution: 2.7  Å
Source Organism:
Similar Structures:
Biological Unit for 6YEZ: octadecameric; determined by author
Molecular Components in 6YEZ
Label Count Molecule
Proteins (18 molecules)
1
Photosystem I P700 Chlorophyll a Apoprotein A1
Molecule annotation
1
Photosystem I P700 Chlorophyll a Apoprotein A2
Molecule annotation
1
Photosystem I Iron-sulfur Center
Molecule annotation
1
Psad
Molecule annotation
1
Psae
Molecule annotation
1
Psaf
Molecule annotation
1
Psag
Molecule annotation
1
Psah
Molecule annotation
1
Photosystem I Reaction Center Subunit Viii
Molecule annotation
1
Psaj
Molecule annotation
1
Photosystem I Reaction Center Subunit X Psak
Molecule annotation
1
Psal
Molecule annotation
1
Lhca1
Molecule annotation
1
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
1
Chlorophyll A-B Binding Protein 3, Chloroplastic
Molecule annotation
1
Chlorophyll A-B Binding Protein P4, Chloroplastic
Molecule annotation
1
Ferredoxin-1, Chloroplastic
Molecule annotation
1
Plastocyanin, Chloroplastic
Molecule annotation
Chemicals and Non-standard biopolymers (244 molecules)
1
1
CHLOROPHYLL A ISOMERCHLOROPHYLL A ISOMER
2
141
CHLOROPHYLL ACHLOROPHYLL A
3
2
PHYLLOQUINONEPHYLLOQUINONE
4
27
BETA-CAROTENEBETA-CAROTENE
5
8
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
6
6
DODECYL-BETA-D-MALTOSIDEDODECYL-BETA-D-MALTOSIDE
7
3
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
8
19
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
9
2
CALCIUM IONCALCIUM ION
10
7
DIGALACTOSYL DIACYL GLYCEROL (DGDG)DIGALACTOSYL DIACYL GLYCEROL (DGDG)
11
7
(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
12
15
CHLOROPHYLL BCHLOROPHYLL B
13
2
(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
14
1
1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
15
1
(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol
16
1
FE2/S2 (INORGANIC) CLUSTERFE2/S2 (INORGANIC) CLUSTER
17
1
COPPER (II) IONCOPPER (II) ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303