6WPT: Structure of the SARS-CoV-2 spike glycoprotein in complex with the S309 neutralizing antibody Fab fragment (open state)

PDB ID: 6WPTDownload
MMDB ID: 188056
PDB Deposition Date: 2020/4/27
Updated in MMDB: 2024/10
Experimental Method:
electron microscopy
Resolution: 3.7  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 6WPT: heptameric; determined by author
Molecular Components in 6WPT
Label Count Molecule
Proteins (7 molecules)
3
Spike Glycoprotein
Molecule annotation
2
S309 Neutralizing Antibody Heavy Chain
Molecule annotation
2
S309 Neutralizing Antibody Light Chain
Molecule annotation
Chemicals and Non-standard biopolymers (65 molecules)
1
59
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
2
beta-D-mannopyranosebeta-D-mannopyranose
3
2
alpha-L-fucopyranosealpha-L-fucopyranose
4
2
alpha-D-mannopyranosealpha-D-mannopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303