National Center for
Biotechnology Information

6V3A: Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

PDB ID:

6V3A Download

MMDB ID:

192844

PDB Deposition Date:

2019/11/25

Updated in MMDB:

2021/03

Experimental Method:

electron microscopy

Resolution:

2.82 Å

Source Organism:

Acinetobacter sp. ANC 4470▼

Taxonomy	Molecule
Acinetobacter sp. ANC 4470	3
Acinetobacter sp. ANC 5600	j
Acinetobacter sp. 263903-1	k, u
Acinetobacter sp. 809848	R
Acinetobacter variabilis	J
Acinetobacter beijerinckii ANC 3835	1
Acinetobacter sp. CIP 51.11	0
Acinetobacter sp. CIP 102082	Y
Acinetobacter baumannii AB0057	2, AN1, C, D, E, F, G, H, I, K, L, M , N, O, Q, S, T, U, V, X, Z, d, e, f, g, h, l, m, n, o, q, s, t, v, w
Acinetobacter rudis CIP 110305	W
Acinetobacter venetianus	r
Acinetobacter baumannii	B, P, sN1, b, c, i, p

Similar Structures:

Biological Unit for 6V3A: 53-meric; determined by author

Molecular Components in 6V3A
Label	Count	Molecule
Proteins (48 molecules)
0	1	50S Ribosomal Protein L33
1	1	50S Ribosomal Protein L34
2	1	50S Ribosomal Protein L35
3	1	50S Ribosomal Protein L36
C	1	50S Ribosomal Protein L2
D	1	50S Ribosomal Protein L3
E	1	50S Ribosomal Protein L4
F	1	50S Ribosomal Protein L5
G	1	50S Ribosomal Protein L6
H	1	50S Ribosomal Protein L9
I	1	50S Ribosomal Protein L13
J	1	50S Ribosomal Protein L14
K	1	50S Ribosomal Protein L15
L	1	50S Ribosomal Protein L16
M	1	50S Ribosomal Protein L17
N	1	50S Ribosomal Protein L18
O	1	50S Ribosomal Protein L19
P	1	50S Ribosomal Protein L20
Q	1	50S Ribosomal Protein L21
R	1	50S Ribosomal Protein L22
S	1	50S Ribosomal Protein L23
T	1	50S Ribosomal Protein L24
U	1	50S Ribosomal Protein L25
V	1	50S Ribosomal Protein L27
W	1	50S Ribosomal Protein L28
X	1	50S Ribosomal Protein L29
Y	1	50S Ribosomal Protein L30
Z	1	50S Ribosomal Protein L32
b	1	30S Ribosomal Protein S2
c	1	30S Ribosomal Protein S3
d	1	30S Ribosomal Protein S4
e	1	30S Ribosomal Protein S5
f	1	30S Ribosomal Protein S6
g	1	30S Ribosomal Protein S7
h	1	30S Ribosomal Protein S8
i	1	30S Ribosomal Protein S9
j	1	30S Ribosomal Protein S10
k	1	30S Ribosomal Protein S11
l	1	30S Ribosomal Protein S12
m	1	30S Ribosomal Protein S13
n	1	30S Ribosomal Protein S14
o	1	30S Ribosomal Protein S15
p	1	30S Ribosomal Protein S16
q	1	30S Ribosomal Protein S17
r	1	30S Ribosomal Protein S18
s	1	30S Ribosomal Protein S19
t	1	30S Ribosomal Protein S20
u	1	30S Ribosomal Protein S21
Nucleotides(5 molecules)
AN1	1	23S Ribosomal RNA
B	1	5S Ribosomal RNA
sN1	1	16S Ribosomal RNA
v	1	tRNA-met
w	1	mRNA
Chemicals and Non-standard biopolymers (95 molecules)
1	1	ZINC ION
2	93	MAGNESIUM ION
3	1	SODIUM ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303