6RNY: PFV intasome - nucleosome strand transfer complex

PDB ID: 6RNYDownload
MMDB ID: 179911
PDB Deposition Date: 2019/5/9
Updated in MMDB: 2019/12
Experimental Method:
electron microscopy
Resolution: 3.9  Å
Source Organism:
Pyrobaculum filamentous virus 1▼
Similar Structures:
Biological Unit for 6RNY: octadecameric; determined by author and by software (PISA)
Molecular Components in 6RNY
Label Count Molecule
Proteins (12 molecules)
2
Histone H3.3
Molecule annotation
2
Histone H4
Molecule annotation
2
Histone H2A Type 1
Molecule annotation
2
Histone H2B Type 1-c/e/f/g/i
Molecule annotation
4
Integrase
Molecule annotation
Nucleotides(6 molecules)
1
DNA (128-mer)
Molecule annotation
1
DNA (108-mer)
Molecule annotation
1
DNA (33-mer)
Molecule annotation
1
DNA (53-mer)
Molecule annotation
2
DNA (5'-d(*ap*tp*tp*gp*tp*cp*ap*tp*gp*gp*ap*ap*tp*tp*tp*cp*gp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
1
2
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303