6NQT: GalNac-T2 soaked with UDP-sugar

PDB ID: 6NQTDownload
MMDB ID: 183476
PDB Deposition Date: 2019/1/21
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 3.05  Å
Source Organism:
Similar Structures:
Biological Unit for 6NQT: dimeric; determined by author and by software (PISA)
Molecular Components in 6NQT
Label Count Molecule
Proteins (2 molecules)
2
Polypeptide N-acetylgalactosaminyltransferase 2
(Gene symbol: GALNT2)
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
2
MANGANESE (II) IONMANGANESE (II) ION
2
2
[[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{R},6~{R})-3-(hex-5-ynoylamino)-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl] hydrogen phosphate[[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{R},6~{R})-3-(hex-5-ynoylamino)-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl] hydrogen phosphate
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303