6JY3: Monomeric Form of Bovine Heart Cytochrome c Oxidase in the Fully Oxidized State

PDB ID: 6JY3Download
MMDB ID: 179522
PDB Deposition Date: 2019/4/26
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 1.85  Å
Source Organism:
Similar Structures:
Biological Unit for 6JY3: tridecameric; determined by author
Molecular Components in 6JY3
Label Count Molecule
Proteins (13 molecules)
1
Cytochrome C Oxidase Subunit 1
Molecule annotation
1
Cytochrome C Oxidase Subunit 2
(Gene symbol: COX2)
Molecule annotation
1
Cytochrome C Oxidase Subunit 3
Molecule annotation
1
Cytochrome C Oxidase Subunit 4 Isoform 1
(Gene symbol: COX4I1)
Molecule annotation
1
Cytochrome C Oxidase Subunit 5A
(Gene symbol: COX5A)
Molecule annotation
1
Cytochrome C Oxidase Subunit 5B
(Gene symbol: COX5B)
Molecule annotation
1
Cytochrome C Oxidase Subunit 6a2, Mitochondrial
(Gene symbol: COX6A2)
Molecule annotation
1
Cytochrome C Oxidase Subunit 6B1
(Gene symbol: COX6B1)
Molecule annotation
1
Cytochrome C Oxidase Subunit 6C
(Gene symbol: MGC148714)
Molecule annotation
1
Cytochrome C Oxidase Subunit 7A1
(Gene symbol: COX7A1)
Molecule annotation
1
Cytochrome C Oxidase Subunit 7B
(Gene symbol: COX7B)
Molecule annotation
1
Cytochrome C Oxidase Subunit 7C, Mitochondrial
(Gene symbol: COX7C)
Molecule annotation
1
Cytochrome C Oxidase Subunit 8B
(Gene symbol: COX8B)
Molecule annotation
Chemicals and Non-standard biopolymers (24 molecules)
1
2
HEME-AHEME-A
2
1
COPPER (II) IONCOPPER (II) ION
3
1
MAGNESIUM IONMAGNESIUM ION
4
2
SODIUM IONSODIUM ION
5
3
CARDIOLIPINCARDIOLIPIN
6
1
PEROXIDE IONPEROXIDE ION
7
2
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
8
8
(2S,3S,4S,5S,6R)-2-(2-decoxyethoxy)-6-(hydroxymethyl)oxane-3,4,5-triol(2S,3S,4S,5S,6R)-2-(2-decoxyethoxy)-6-(hydroxymethyl)oxane-3,4,5-triol
9
1
DINUCLEAR COPPER IONDINUCLEAR COPPER ION
10
1
CHOLIC ACIDCHOLIC ACID
11
1
(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE
12
1
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303