6IDE: Crystal structure of the Vibrio cholera VqmA-Ligand-DNA complex provides molecular mechanisms for drug design

PDB ID: 6IDEDownload
MMDB ID: 170509
PDB Deposition Date: 2018/9/9
Updated in MMDB: 2024/04
Experimental Method:
x-ray diffraction
Resolution: 2.51  Å
Source Organism:
Similar Structures:
Biological Unit for 6IDE: tetrameric; determined by author and by software (PISA)
Molecular Components in 6IDE
Label Count Molecule
Proteins (2 molecules)
2
Transcriptional Regulator Luxr Family
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*ap*gp*gp*gp*gp*gp*gp*ap*ap*ap*tp*cp*cp*cp*cp*cp*cp*t)-3')
Molecule annotation
1
DNA (5'-d(*ap*gp*gp*gp*gp*gp*gp*ap*tp*tp*tp*cp*cp*cp*cp*cp*cp*t)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
1
2
3,5-dimethylpyrazin-2-ol3,5-dimethylpyrazin-2-ol
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303