6CIM: Pre-Reaction Complex, RAG1(E962Q)/2-nicked/intact 12/23RSS complex in Mn2+

PDB ID: 6CIMDownload
MMDB ID: 161326
PDB Deposition Date: 2018/2/24
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 3.6  Å
Source Organism:
Mus musculus▼
Similar Structures:
Biological Unit for 6CIM: decameric; determined by author and by software (PISA)
Molecular Components in 6CIM
Label Count Molecule
Proteins (5 molecules)
2
V(d)j Recombination-activating Protein 1
Molecule annotation
2
V(d)j Recombination-activating Protein 2
Molecule annotation
1
High Mobility Group Protein B1
Molecule annotation
Nucleotides(5 molecules)
1
Nicked 12rss Intermediate Reverse Strand
Molecule annotation
1
DNA (5'-d(*gp*cp*cp*tp*gp*tp*cp*tp*tp*a)-3')
Molecule annotation
1
Nicked 12rss Intermediate Forward Strand
Molecule annotation
1
Intact 23rss Substrate Reverse Strand
Molecule annotation
1
Intact 23rss Substrate Forward Strand
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
2
ZINC IONZINC ION
2
2
MANGANESE (II) IONMANGANESE (II) ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303