6CIJ: Cryo-EM structure of mouse RAG1/2 HFC complex containing partial HMGB1 linker(3.9 A)

PDB ID: 6CIJDownload
MMDB ID: 161323
PDB Deposition Date: 2018/2/24
Updated in MMDB: 2019/12
Experimental Method:
electron microscopy
Resolution: 3.9  Å
Source Organism:
Mus musculus▼
Similar Structures:
Biological Unit for 6CIJ: undecameric; determined by author
Molecular Components in 6CIJ
Label Count Molecule
Proteins (5 molecules)
2
V(d)j Recombination-activating Protein 1
Molecule annotation
1
High Mobility Group Protein B1
Molecule annotation
2
V(d)j Recombination-activating Protein 2
Molecule annotation
Nucleotides(6 molecules)
1
DNA (46-mer)
Molecule annotation
1
DNA (5'-d(*gp*ap*tp*cp*tp*gp*gp*cp*cp*tp*gp*tp*cp*tp*tp*a)-3')
Molecule annotation
1
DNA (5'-d(p*cp*tp*gp*gp*ap*tp*cp*tp*gp*gp*cp*cp*tp*gp*tp*cp*tp*tp*a)-3')
Molecule annotation
1
DNA (60-mer)
Molecule annotation
1
DNA (30-mer)
Molecule annotation
1
DNA (41-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
2
ZINC IONZINC ION
2
2
CALCIUM IONCALCIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303