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5YBB:
Structural basis underlying complex assembly andconformational transition of the type I R-M system
PDB ID:
5YBB
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MMDB ID:
156685
PDB Deposition Date:
2017/9/4
Updated in MMDB:
2017/12
Experimental Method:
x-ray diffraction
Resolution:
3.2 Å
Source Organism:
Caldanaerobacter subterraneus subsp. tengcongensis MB4
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Taxonomy
Molecule
Caldanaerobacter subterraneus subsp. tengcongensis MB4
A, C, D, B, E, G
Unassigned
H, I
Similar Structures:
VAST+
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Biological Unit for 5YBB: octameric; determined by author and by software (PISA)
Molecular Components in 5YBB
Label
Count
Molecule
Proteins (6 molecules)
A
C
B
E
4
Type I Restriction-modification System Methyltransferase Subunit
D
G
2
Restriction Endonuclease S Subunits
Nucleotides(2 molecules)
H
1
DNA
I
1
DNA
Chemicals and Non-standard biopolymers (2 molecules)
1
2
S-ADENOSYLMETHIONINE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303