National Center for
Biotechnology Information

5GPN: Architecture of mammalian respirasome

PDB ID:

5GPN Download

MMDB ID:

171218

PDB Deposition Date:

2016/8/3

Updated in MMDB:

2024/10

Experimental Method:

electron microscopy

Resolution:

5.4 Å

Source Organism:

Bos taurus▼

Taxonomy	Molecule
Bos taurus	A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, s, y , z
Sus scrofa	W, Y, Z, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, t, u, v, w, x, Aa, Ab, Ac, Ad, Ae, Af , Ag, Ah, Ai, Aj, Ak, Al, Am, An , Ao, Ap, Aq, Ar, As, At, Au, Av , Aw

Similar Structures:

Biological Unit for 5GPN: 84-meric; determined by author

Molecular Components in 5GPN
Label	Count	Molecule
Proteins (84 molecules)
A M	2	Cytochrome B-c1 Complex Subunit 1, Mitochondrial
B N	2	Cytochrome B-c1 Complex Subunit 2, Mitochondrial
C O	2	Cytochrome B
D P	2	Cytochrome C1, Heme Protein, Mitochondrial
E Q	2	Cytochrome B-c1 Complex Subunit Rieske, Mitochondrial
F R	2	Cytochrome B-c1 Complex Subunit 7
G S	2	Cytochrome B-c1 Complex Subunit 8
H T	2	Cytochrome B-c1 Complex Subunit 6, Mitochondrial
I U	2	Cytochrome B-c1 Complex Subunit Rieske, Mitochondrial
J L	2	Cytochrome B-c1 Complex Subunit 9
K V	2	Cytochrome B-c1 Complex Subunit 10
W	1	Nadh Dehydrogenase [ubiquinone] Iron-sulfur Protein 3
Y	1	Nadh-ubiquinone Oxidoreductase 75 KDA Subunit
Z	1	Nadh Dehydrogenase [ubiquinone] Iron-sulfur Protein 2
a	1	Nadh Dehydrogenase [ubiquinone] Iron-sulfur Protein 7
b	1	Nadh Dehydrogenase [ubiquinone] Iron-sulfur Protein 8
c	1	Nadh Dehydrogenase [ubiquinone] Flavoprotein 1, Mitochondrial
d	1	Nadh Dehydrogenase [ubiquinone] Flavoprotein 2, Mitochondrial
e	1	Nadh-ubiquinone Oxidoreductase Chain 1
f	1	Nadh-ubiquinone Oxidoreductase Chain 2
g	1	Nadh-ubiquinone Oxidoreductase Chain 3
h	1	Nadh-ubiquinone Oxidoreductase Chain 4
i	1	Nadh-ubiquinone Oxidoreductase Chain 4L
j	1	Nadh-ubiquinone Oxidoreductase Chain 5
k l	2	Nadh-ubiquinone Oxidoreductase Chain 6
m	1	Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 3
n	1	Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 2
o	1	Nadh Dehydrogenase [ubiquinone] Iron-sulfur Protein 5
p	1	Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 9
q v	2	Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 10, Mitochondrial
r	1	Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 13
t Aa	2	Acyl Carrier Protein
u Ai	2	Nadh Dehydrogenase [ubiquinone] 1 Beta Subcomplex Subunit 5
w	1	Mitochondrial Nadh Dehydrogenase Fe-s Protein 4
x	1	Nadh Dehydrogenase [ubiquinone] Iron-sulfur Protein 6, Mitochondrial
0	1	Cytochrome C Oxidase Subunit 3
1	1	Cytochrome C Oxidase Subunit 4 Isoform 1, Mitochondrial
2	1	Cytochrome C Oxidase Subunit 5A, Mitochondrial
3	1	Cytochrome C Oxidase Subunit 5B, Mitochondrial
4	1	Cytochrome C Oxidase Subunit 6a2, Mitochondrial
5	1	Cytochrome C Oxidase Subunit 6B1
6	1	Cytochrome C Oxidase Subunit 6C
7	1	Cytochrome C Oxidase Subunit 7a1, Mitochondrial
8	1	Cytochrome C Oxidase Subunit 7B, Mitochondrial
9	1	Cytochrome C Oxidase Subunit 7C, Mitochondrial
s	1	Cytochrome C Oxidase Subunit 8B, Mitochondrial
y	1	Cytochrome C Oxidase Subunit 1
z	1	Cytochrome C Oxidase Subunit 2
Ab Ah	2	Nadh Dehydrogenase [ubiquinone] 1 Unknown Subunit Fragment
Ac	1	Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 1
Ad Ao Ap Av	4	Nadh Dehydrogenase [ubiquinone] 1 Unknown Subunit Fragment
Ae	1	Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 5
Af	1	Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 6
Ag	1	Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 11
Aj	1	Nadh Dehydrogenase [ubiquinone] 1 Beta Subcomplex Subunit 10
Ak	1	Nadh Dehydrogenase [ubiquinone] 1 Beta Subcomplex Subunit 9
Al	1	Nadh Dehydrogenase [ubiquinone] 1 Subunit C2
Am	1	Nadh Dehydrogenase [ubiquinone] 1 Subunit C1
An	1	Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 8
Aq As Aw	3	Nadh Dehydrogenase [ubiquinone] 1 Unknown Subunit Fragment
Ar	1	Nadh Dehydrogenase [ubiquinone] 1 Unknown Subunit Fragment
At	1	Nadh Dehydrogenase [ubiquinone] 1 Unknown Subunit Fragment
Au	1	Nadh Dehydrogenase [ubiquinone] 1 Unknown Subunit Fragment
Chemicals and Non-standard biopolymers (25 molecules)
1	4	PROTOPORPHYRIN IX CONTAINING FE
2	2	HEME C
3	4	FE2/S2 (INORGANIC) CLUSTER
4	6	IRON/SULFUR CLUSTER
5	1	FLAVIN MONONUCLEOTIDE
6	1	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
7	1	ZINC ION
8	2	HEME-A
9	3	COPPER (II) ION
10	1	MAGNESIUM ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303