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5F9H:
Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA
PDB ID:
5F9H
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MMDB ID:
135544
PDB Deposition Date:
2015/12/9
Updated in MMDB:
2023/10
Experimental Method:
x-ray diffraction
Resolution:
3.1 Å
Source Organism:
synthetic construct
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Taxonomy
Molecule
synthetic construct
B, D, F, H, J, L
Homo sapiens
A, C, E, G, I, K
Similar Structures:
VAST+
Download sequence data
Biological Unit for 5F9H: dodecameric; determined by author and by software (PISA)
Molecular Components in 5F9H
Label
Count
Molecule
Proteins (6 molecules)
A
C
E
G
I
K
6
Probable Atp-dependent RNA Helicase Ddx58
Nucleotides(6 molecules)
B
D
F
H
J
L
6
RNA (5'-r(p*ap*ap*up*ap*up*ap*ap*up*ap*gp*up*gp*ap*up*ap*up*up*ap*up*ap*up*up*c)-3')
Chemicals and Non-standard biopolymers (20 molecules)
1
6
ZINC ION
2
8
MAGNESIUM ION
3
6
GUANOSINE-5'-TRIPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303