National Center for
Biotechnology Information

4V9D: Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

PDB ID:

4V9D Download

MMDB ID:

171113

PDB Deposition Date:

2012/7/31

Updated in MMDB:

2023/09

Experimental Method:

x-ray diffraction

Resolution:

3 Å

Source Organism:

Escherichia coli K-12▼

Taxonomy	Molecule
Escherichia coli K-12	AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AY, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, BO, BP, BQ, BR, BS, BT, BU, BV, CB, CC, CD, CE, CF, CG, CH, CI, CJ, CK, CL, CM, CN, CO, CP, CQ, CR, CS, CT, CU, CV, CW, CX, CY, CZ, C0, C1, C2, C3, C4, DB, DC, DD, DE, DF, DG, DH, DI, DJ, DK, DL, DM, DN, DO, DP, DQ, DR, DS, DT, DU, DV, DW, DX, DY, DZ, D0, D1, D2, D3, D4
synthetic construct	AX, BX
Escherichia coli	AA, BA, CA, DA

Similar Structures:

Biological Unit for 4V9D: 55-meric; determined by author

Molecular Components in 4V9D
Label	Count	Molecule
Proteins (50 molecules)
AB	1	30S Ribosomal Protein S2
AC	1	30S Ribosomal Protein S3
AD	1	30S Ribosomal Protein S4
AE	1	30S Ribosomal Protein S5
AF	1	30S Ribosomal Protein S6
AG	1	30S Ribosomal Protein S7
AH	1	30S Ribosomal Protein S8
AI	1	30S Ribosomal Protein S9
AJ	1	30S Ribosomal Protein S10
AK	1	30S Ribosomal Protein S11
AL	1	30S Ribosomal Protein S12
AM	1	30S Ribosomal Protein S13
AN	1	30S Ribosomal Protein S14
AO	1	30S Ribosomal Protein S15
AP	1	30S Ribosomal Protein S16
AQ	1	30S Ribosomal Protein S17
AR	1	30S Ribosomal Protein S18
AS	1	30S Ribosomal Protein S19
AT	1	30S Ribosomal Protein S20
AU	1	30S Ribosomal Protein S21
AY	1	Ribosome Recycling Factor
CC	1	50S Ribosomal Protein L2
CD	1	50S Ribosomal Protein L3
CE	1	50S Ribosomal Protein L4
CF	1	50S Ribosomal Protein L5
CG	1	50S Ribosomal Protein L6
CH	1	50S Ribosomal Protein L9
CI	1	50S Ribosomal Protein L11
CJ	1	50S Ribosomal Protein L13
CK	1	50S Ribosomal Protein L14
CL	1	50S Ribosomal Protein L15
CM	1	50S Ribosomal Protein L16
CN	1	50S Ribosomal Protein L17
CO	1	50S Ribosomal Protein L18
CP	1	50S Ribosomal Protein L19
CQ	1	50S Ribosomal Protein L20
CR	1	50S Ribosomal Protein L21
CS	1	50S Ribosomal Protein L22
CT	1	50S Ribosomal Protein L23
CU	1	50S Ribosomal Protein L24
CV	1	50S Ribosomal Protein L25
CW	1	50S Ribosomal Protein L27
CX	1	50S Ribosomal Protein L28
CY	1	50S Ribosomal Protein L29
CZ	1	50S Ribosomal Protein L30
C0	1	50S Ribosomal Protein L32
C1	1	50S Ribosomal Protein L33
C2	1	50S Ribosomal Protein L34
C3	1	50S Ribosomal Protein L35
C4	1	50S Ribosomal Protein L36
Nucleotides(5 molecules)
AA	1	16S rRNA
AV	1	Phenylalanine Specific Transfer RNA
AX	1	Messenger RNA
CA	1	23S rRNA
CB	1	5S rRNA
Chemicals and Non-standard biopolymers (241 molecules)
1	240	MAGNESIUM ION
2	1	ZINC ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303