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4NFL:
Crystal structure of human mitochondrial 5'(3')-deoxyribonucleotidase in complex with the inhibitor NPB-T
PDB ID:
4NFL
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MMDB ID:
123009
PDB Deposition Date:
2013/10/31
Updated in MMDB:
2014/10
Experimental Method:
x-ray diffraction
Resolution:
1.375 Å
Source Organism:
Homo sapiens
Similar Structures:
VAST+
Download sequence data
Biological Unit for 4NFL: dimeric; determined by author and by software (PISA)
Molecular Components in 4NFL
Label
Count
Molecule
Proteins (2 molecules)
A
A_1
2
5'(3')-deoxyribonucleotidase, Mitochondrial
(Gene symbol:
NT5M
)
Chemicals and Non-standard biopolymers (36 molecules)
1
2
MAGNESIUM ION
2
2
PHOSPHATE ION
3
2
1-{2-deoxy-3,5-O-[(4-nitrophenyl)(phosphono)methylidene]-beta-D-threo-pentofuranosyl}-5-methylpyrimidine-2,4(1H,3H)-dione
4
2
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
5
14
GLYCEROL
6
14
DI(HYDROXYETHYL)ETHER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303