3VDR: Crystal structure of D-3-hydroxybutyrate dehydrogenase, prepared in the presence of the substrate D-3-hydroxybutyrate and NAD(+)

PDB ID: 3VDRDownload
MMDB ID: 97127
PDB Deposition Date: 2012/1/6
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 3  Å
Source Organism:
Similar Structures:
Biological Unit for 3VDR: tetrameric; determined by author and by software (PISA)
Molecular Components in 3VDR
Label Count Molecule
Proteins (4 molecules)
4
D-3-hydroxybutyrate Dehydrogenase
Molecule annotation
Chemicals and Non-standard biopolymers (21 molecules)
1
2
CALCIUM IONCALCIUM ION
2
3
CHLORIDE IONCHLORIDE ION
3
4
NICOTINAMIDE-ADENINE-DINUCLEOTIDENICOTINAMIDE-ADENINE-DINUCLEOTIDE
4
4
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
5
4
(3R)-3-hydroxybutanoic acid(3R)-3-hydroxybutanoic acid
6
4
ACETOACETIC ACIDACETOACETIC ACID
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303