3L2V: Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese and MK0518 (Raltegravir)

PDB ID: 3L2VDownload
MMDB ID: 80009
PDB Deposition Date: 2009/12/15
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 3.2  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 3L2V: octameric; determined by author and by software (PISA)
Molecular Components in 3L2V
Label Count Molecule
Proteins (4 molecules)
4
Integrase
Molecule annotation
Nucleotides(4 molecules)
2
5'-d(*ap*tp*tp*gp*tp*cp*ap*tp*gp*gp*ap*ap*tp*tp*tp*tp*gp*tp*a)-3'
Molecule annotation
2
5'-d(*tp*ap*cp*ap*ap*ap*ap*tp*tp*cp*cp*ap*tp*gp*ap*cp*a)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (20 molecules)
1
2
ZINC IONZINC ION
2
6
MANGANESE (II) IONMANGANESE (II) ION
3
2
AMMONIUM IONAMMONIUM ION
4
2
N-(4-fluorobenzyl)-5-hydroxy-1-methyl-2-(1-methyl-1-{[(5-methyl-1,3,4-oxadiazol-2-yl)carbonyl]amino}ethyl)-6-oxo-1,6-di hydropyrimidine-4-carboxamideN-(4-fluorobenzyl)-5-hydroxy-1-methyl-2-(1-methyl-1-{[(5-methyl-1,3,4-oxadiazol-2-yl)carbonyl]amino}ethyl)-6-oxo-1,6-di hydropyrimidine-4-carboxamide
5
8
GLYCEROLGLYCEROL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303