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3GTM:
Co-complex of Backtracked RNA polymerase II with TFIIS
PDB ID:
3GTM
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MMDB ID:
73189
PDB Deposition Date:
2009/3/27
Updated in MMDB:
2024/10
Experimental Method:
x-ray diffraction
Resolution:
3.8 Å
Source Organism:
Saccharomyces cerevisiae S288C
▼
Taxonomy
Molecule
Saccharomyces cerevisiae S288C
A, B, C, E, F, H, I, J, K, L, S
synthetic construct
M, N, O
Similar Structures:
VAST+
Download sequence data
Biological Unit for 3GTM: 14-meric; determined by author and by software (PISA)
Molecular Components in 3GTM
Label
Count
Molecule
Proteins (11 molecules)
A
1
DNA-directed RNA Polymerase II Subunit Rpb1
B
1
DNA-directed RNA Polymerase II Subunit Rpb2
C
1
DNA-directed RNA Polymerase II Subunit Rpb3
E
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc1
F
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc2
H
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
I
1
DNA-directed RNA Polymerase II Subunit Rpb9
J
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc5
K
1
DNA-directed RNA Polymerase II Subunit Rpb11
L
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc4
S
1
Transcription Elongation Factor S-ii
Nucleotides(3 molecules)
M
1
RNA (5'-r(*ap*up*cp*gp*ap*gp*ap*gp*gp*ap*up*gp*c)-3')
N
1
DNA (28-mer)
O
1
DNA (5'-d(*cp*tp*gp*cp*tp*tp*ap*tp*cp*gp*gp*tp*ap*g)-3')
Chemicals and Non-standard biopolymers (10 molecules)
1
1
MAGNESIUM ION
2
9
ZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303