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2D5V:
Crystal structure of HNF-6alpha DNA-binding domain in complex with the TTR promoter
PDB ID:
2D5V
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MMDB ID:
87012
PDB Deposition Date:
2005/11/7
Updated in MMDB:
2010/12
Experimental Method:
x-ray diffraction
Resolution:
2 Å
Source Organism:
synthetic construct
▼
Taxonomy
Molecule
synthetic construct
C, D, E, F
Rattus norvegicus
A, B
Similar Structures:
VAST+
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Biological Unit for 2D5V: trimeric; determined by author
Molecular Components in 2D5V
Label
Count
Molecule
Protein (1 molecule)
A
1
Hepatocyte Nuclear Factor 6
Nucleotides(2 molecules)
C
1
5'-d(*tp*cp*tp*ap*ap*gp*tp*cp*ap*ap*tp*ap*ap*t)-3'
D
1
5'-d(*ap*tp*tp*ap*tp*tp*gp*ap*cp*tp*tp*ap*gp*a)-3'
Chemical and Non-standard biopolymers (1 molecule)
1
1
ACETATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303