1WKL: Crystal Structure of Nucleoside Diphosphate Kinase from Thermus thermophilus HB8 in Complex with ATP and ADP

PDB ID: 1WKLDownload
MMDB ID: 34558
PDB Deposition Date: 2004/6/1
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 2.2  Å
Source Organism:
Similar Structures:
Biological Unit for 1WKL: hexameric; determined by author and by software (PISA,PQS)
Molecular Components in 1WKL
Label Count Molecule
Proteins (6 molecules)
6
Nucleotide Diphosphate Kinase
(Gene symbol: ndk)
Molecule annotation
Chemicals and Non-standard biopolymers (12 molecules)
1
3
PHOSPHONIC ACIDPHOSPHONIC ACID
2
3
ADENOSINE-5'-DIPHOSPHATEADENOSINE-5'-DIPHOSPHATE
3
3
MAGNESIUM IONMAGNESIUM ION
4
3
ADENOSINE-5'-TRIPHOSPHATEADENOSINE-5'-TRIPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303