1UBM: Three-dimensional Structure of The Carbon Monoxide Complex of [NiFe]hydrogenase From Desulufovibrio vulgaris Miyazaki F

PDB ID: 1UBMDownload
MMDB ID: 22854
PDB Deposition Date: 2003/4/4
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 1.4  Å
Source Organism:
Similar Structures:
Biological Unit for 1UBM: dimeric; determined by author and by software (PISA)
Molecular Components in 1UBM
Label Count Molecule
Proteins (2 molecules)
1
Periplasmic [nife] Hydrogenase Small Subunit
Molecule annotation
1
Periplasmic [nife] Hydrogenase Large Subunit
Molecule annotation
Chemicals and Non-standard biopolymers (10 molecules)
1
2
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
2
1
FE3-S4 CLUSTERFE3-S4 CLUSTER
3
5
(4S)-2-METHYL-2,4-PENTANEDIOL(4S)-2-METHYL-2,4-PENTANEDIOL
4
1
MAGNESIUM IONMAGNESIUM ION
5
1
(MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS,S)NICKEL(II)](FE-NI)(MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS,S)NICKEL(II)](FE-NI)
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303