1RRV: X-ray crystal structure of TDP-vancosaminyltransferase GtfD as a complex with TDP and the natural substrate, desvancosaminyl vancomycin

PDB ID: 1RRVDownload
MMDB ID: 93066
PDB Deposition Date: 2003/12/9
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2  Å
Source Organism:
Similar Structures:
Biological Unit for 1RRV: trimeric; determined by software (PISA)
Molecular Components in 1RRV
Label Count Molecule
Protein (1 molecule)
1
Glycosyltransferase Gtfd
Molecule annotation
Chemicals and Non-standard biopolymers (11 molecules)
CD
2
DESVANCOSAMINYL VANCOMYCIN
1
2
POTASSIUM IONPOTASSIUM ION
2
2
THYMIDINE-5'-DIPHOSPHATETHYMIDINE-5'-DIPHOSPHATE
3
3
GLYCEROLGLYCEROL
4
2
beta-D-glucopyranosebeta-D-glucopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303