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1K8A: Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

PDB ID:	1K8A Download
MMDB ID:	49910
PDB Deposition Date:	2001/10/23
Updated in MMDB:	2012/11
Experimental Method:	x-ray diffraction
Resolution:	3 Å
Source Organism:	Haloarcula marismortui
Similar Structures:

Biological Unit for 1K8A: 30-meric; determined by author

Molecular Components in 1K8A
Label	Count	Molecule
Proteins (28 molecules)
C	1	Ribosomal Protein L2 (Gene symbol: RR_RS11185)
D	1	Ribosomal Protein L3 (Gene symbol: rpl3p)
E	1	Ribosomal Protein L4 (Gene symbol: rpl4p)
F	1	Ribosomal Protein L5 (Gene symbol: RR_RS11135)
G	1	Ribosomal Protein L6 (Gene symbol: RR_RS11120)
H	1	Ribosomal Protein L7ae (Gene symbol: RR_RS04485)
I	1	Ribosomal Protein L10 (Gene symbol: RR_RS10280)
J	1	Ribosomal Protein L10e
K	1	Ribosomal Protein L13 (Gene symbol: RR_RS04320)
L	1	Ribosomal Protein L14 (Gene symbol: RR_RS11150)
M	1	Ribosomal Protein L15 (Gene symbol: RR_RS11090)
N	1	Ribosomal Protein L15e
O	1	Ribosomal Protein L18 (Gene symbol: RR_RS11105)
P	1	Ribosomal Protein L18e (Gene symbol: RR_RS04315)
Q	1	Ribosomal Protein L19e (Gene symbol: RR_RS11110)
R	1	Ribosomal Protein L21e (Gene symbol: RR_RS05195)
S	1	Ribosomal Protein L22 (Gene symbol: RR_RS11175)
T	1	Ribosomal Protein L23 (Gene symbol: RR_RS11190)
U	1	Ribosomal Protein L24 (Gene symbol: RR_RS11145)
V	1	Ribosomal Protein L24e (Gene symbol: RR_RS04495)
W	1	Ribosomal Protein L29 (Gene symbol: rpmC)
X	1	Ribosomal Protein L30 (Gene symbol: rpmD)
Y	1	Ribosomal Protein L31e (Gene symbol: RR_RS17815)
Z	1	Ribosomal Protein L32e (Gene symbol: RR_RS11115)
1	1	Ribosomal Protein L37ae
2	1	Ribosomal Protein L37e
3	1	Ribosomal Protein L39e (Gene symbol: RR_RS17810)
4	1	Ribosomal Protein L44e (Gene symbol: RR_RS19595)
Nucleotides(2 molecules)
A	1	23S rRNA
B	1	5S rRNA
Chemicals and Non-standard biopolymers (234 molecules)
1	1	CARBOMYCIN A
2	119	MAGNESIUM ION
3	83	SODIUM ION
4	23	CHLORIDE ION
5	3	POTASSIUM ION
6	5	CADMIUM ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303