2CRU,2JXN


Conserved Protein Domain Family
dsDNA_bind

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pfam01984: dsDNA_bind (this model, PSSM-Id:307898 is obsolete and has been replaced by 460404)
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Double-stranded DNA-binding domain
This domain is believed to bind double-stranded DNA of 20 bases length.
Statistics
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PSSM-Id: 307898
Aligned: 210 rows
Threshold Bit Score: 68.6562
Created: 2-Aug-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2CRU_A           8 LRRQRLAELQAKHGDPGd--------------aAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYL 73  human
160_pfamImport   1 IRRRRMAELQQQAAAQAqqqp--------sdaqAQEQMRRELEAQKKQALMQILTPEARSRLANLRLTKPEFVDQIELQL 72 
77_pfamImport    1 LRRKRMQQLQQQASQQAgq------------aeSQEQMRMEVEAQKRQVMVQILTPEARGRLANLRLTKPEFVDQVELQL 68 
O27652           7 IRRKKMLELQQKAQQQAme------------aeAQEQMRQQLEMQKKQIMMQILTPEARSRLANLRLTRPDFVEQIELQL 74  Methanothermo...
A5UL35           7 IRRKRMAELEARQAAAQgqmqqq-----aqqqmQQQEAQRQFEEQKKALIAQILTTEARSRLANLKLTKPELVNQIEIQL 81  Methanobrevib...
145_pfamImport   1 IRRKKLEQLQRQQAMAAnqqqmqq---qaqqqaQQQAQQQQLEQQINQAVRQIMTPEARSRLANLKLTKPELVQQIEIQL 77 
44_pfamImport    1 LRKKRMAELQRQAAMNAdpqmaqqqmaqqqmaqQQLAQQQEMEAQLKQAMRQILTPEARGRLDNLRLTKPELVQNIEIQL 80 
Q2NGR0           7 IRRRRMEQLKQQQLAAQqqqgas-----leqmqQEEQARQQFENQKKNALRQILTPEARQRLANLRLTKAELVNAIEMQL 81  Methanosphaer...
65_pfamImport    1 IRQQKMAELQARA--------------------AEEQARRQRELERAAVMRTILTPEARQRLNNLKLIKPEIAEKVETYL 60 
20_pfamImport    1 LQEKILAEMSEK---------------------KEREEEARELQRIDAIVKSLLTSDAWQRLKRVELVKPELANDVKIYL 59 
2CRU_A          74 IQMARYGQLSEKVSEQGLIEILKKVSQqTEKtTTVKFNR 112 human
160_pfamImport  73 IQLAQMGRVQSKITDQQLKELLRKLSG-QKRdINI--TW 108
77_pfamImport   69 IQLAQMGRIKSKITDDQLKVLLKKLVG-QKReMKI--TR 104
O27652          75 IQLAQMGRVRSKITDEQLKELLKRVAG-KKReIKI--SR 110 Methanothermobacter thermautotrophicus str. Delta H
A5UL35          82 IQSAQAGSLRGKVTDEQLKVLLRQIAG-QKReIKI--TR 117 Methanobrevibacter smithii ATCC 35061
145_pfamImport  78 IQSAQAGSLRGKVTDEQLKVLLRQLAS-QKReIHI--TR 113
44_pfamImport   81 LQSAQAGSLRGKVTDEQLKVLLKNLMG-QKReIHI--TR 116
Q2NGR0          82 IQMAQAKRLQIPVTDATLKQILRETTS-NKReIHI--TR 117 Methanosphaera stadtmanae DSM 3091
65_pfamImport   61 IQVSQTGNIRLPVDDETLKLILDKIMP-KKReTRIEFRS 98 
20_pfamImport   60 IQLYSAGKLTRKLTDDELKTLLASLSErAKRdFNIRVV- 97 
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