2JXN,6IQC


Conserved Protein Domain Family
dsDNA_bind

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pfam01984: dsDNA_bind 
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Double-stranded DNA-binding domain
This domain is believed to bind double-stranded DNA of 20 bases length.
Statistics
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PSSM-Id: 460404
Aligned: 191 rows
Threshold Bit Score: 70.604
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2JXN_A           8 IRECRLAQLKN--NSGGTngdrns----ganngGGENSA-----PVGAAIANFLEPQALERLSRVALVRRDRAQAVETYL 76  baker's yeast
EQB64634        10 IKRKRLADLQNqaAANQAmq------------dREEIQRkaaekERQDIVKRFVTPEAYERLTNVKLVRPELVENVENQI 77 
WP_012309969    10 LQEKILAEMSEk---------------------KEREEEarelqRIDAIVKSLLTSDAWQRLKRVELVKPELANDVKIYL 68  Candidatus Ko...
Q2NGR0           7 IRRRRMEQLKQqqLAAQQqqgas-----leqmqQEEQARqqfenQKKNALRQILTPEARQRLANLRLTKAELVNAIEMQL 81  Methanosphaer...
agres:mru_0397   7 LRKKRMAELQRqaAMNADpqmaqqqmaqqqmaqQQLAQQqemeaQLKQAMRQILTPEARGRLDNLRLTKPELVQNIEIQL 86 
BAJ48392        14 IRQQKMAELQAr--------------------aAEEQARrqrelERAAVMRTILTPEARQRLNNLKLIKPEIAEKVETYL 73 
Q58103           6 IKRKKLLELQKklAEQQ----------------QQEEALleaemQKRALLRKILTPEARERLERIRLARPEFAEAVEVQL 69  Methanocaldoc...
A6UVQ4           6 IKRQKMMELQQq-QAQGApnpe-------eiqqQQEQERaayeaQKKQIMKKILSEEARHRLSNIKMVKPEFAEQVEMQL 77  Methanococcus...
Q6M0W1           6 IRQRRLQEMQAkaQAQGAandp-------eaqrQMQEQQmqyemQKQKILRQILSEEARSRLARIKLAKPQFAEQVEMQL 78  Methanococcus...
jgi:Mvol_1571    6 IKQQKLAEMQQrvQNDPEaqaq--------mqqQLEEQRaqqelQKQKLMRQILSEEARSRLARIKMAKPQFAEQVEYQL 77 
2JXN_A          77 KKLIATNNVTHKITEAEIVSILNGIAK--Qq-NSQnnSKIIFE 116 baker's yeast
EQB64634        78 IMLAQSGRLNRLITDAEVKSLLARLS------EKRe-TKI--E 111
WP_012309969    69 IQLYSAGKLTRKLTDDELKTLLASLSEr----AKRd-FNIRVV 106 Candidatus Korarchaeum cryptofilum
Q2NGR0          82 IQMAQAKRLQIPVTDATLKQILRETTS-----NKRe-IHI--T 116 Methanosphaera stadtmanae DSM 3091
agres:mru_0397  87 LQSAQAGSLRGKVTDEQLKVLLKNLMG-----QKRe-IHI--T 121
BAJ48392        74 IQVSQTGNIRLPVDDETLKLILDKIMP-----KKRe-TRIEFR 110
Q58103          70 IQLAQLGRLPIPLSDEDFKALLERISAltK--RKRe-IKI--V 107 Methanocaldococcus jannaschii DSM 2661
A6UVQ4          78 IQLAQSGRLPIPVSDEYFKTLLDQLYTmgSakKKRd-IKF--V 117 Methanococcus aeolicus Nankai-3
Q6M0W1          79 IQLAQAGKLPVPLTDEYFKGLLDKIYEmnRp-AKKe-ITI--M 117 Methanococcus maripaludis S2
jgi:Mvol_1571   78 IQLAQSGRLPIPLDDDRFRVILDKIHEstK--PKRs-FSI--T 115
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