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Report for CCDS14002.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14002.1 Public Homo sapiens 22 SGSM3 24 110 108 CCDS HistoryNCBI Gene:27352Re-query CCDS DB by CCDS ID:14002.1Re-query CCDS DB by GeneID:27352See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14002.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000248929.14 ENSP00000248929.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000248929.14Link to Ensembl Protein Viewer:ENSP00000248929.8Re-query CCDS DB by Nucleotide ID:ENST00000248929Re-query CCDS DB by Protein ID:ENSP00000248929
Original member Current member NCBI NM_015705.6 NP_056520.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015705.6Link to Protein Sequence:NP_056520.2Re-query CCDS DB by Nucleotide ID:NM_015705Re-query CCDS DB by Protein ID:NP_056520Link to BLAST:NP_056520.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056520.2 749 Q96HU1-1 749 100% 0 0

Chromosomal Locations for CCDS 14002.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 40400807 40400813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40401593 40401675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40402139 40402205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40404247 40404455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40404557 40404664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40405141 40405284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40405649 40405844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40406078 40406223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40406438 40406662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40407017 40407071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40407201 40407328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40407413 40407568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40407789 40407843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40408071 40408120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40408277 40408429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40408627 40408697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40408794 40408842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40408933 40409018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40409250 40409372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40409465 40409525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40409682 40409759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2250 nt):
ATGTCAGGAAGCCATACACCTGCCTGTGGCCCTTTCTCAGCCCTGACTCCGAGCATATGGCCCCAGGAGA
TC
TTGGCCAAGTACACGCAGAAGGAAGAGTCAGCAGAGCAACCAGAGTTCTACTACGATGAGTTTGGTTT
C
CGTGTGTACAAGGAAGAAGGTGATGAGCCTGGCTCCAGTCTGCTGGCGAACTCCCCTCTGATGGAGGAT
GCT
CCACAGAGGCTGCGGTGGCAGGCCCACCTGGAGTTCACCCATAACCACGATGTGGGGGATCTCACCT
GG
GACAAGATTGCCGTCTCCCTACCCCGCTCTGAGAAGCTCCGCTCCCTGGTGCTGGCCGGCATCCCACA
T
GGCATGAGGCCACAGCTGTGGATGCGGCTCTCTGGGGCCCTGCAGAAGAAGAGGAACTCTGAGCTGTCC
TAC
CGCGAGATTGTGAAGAACAGCTCCAACGATGAGACCATCGCTGCCAAGCAGATCGAGAAGGACCTGC
TC
CGCACCATGCCCAGCAACGCCTGCTTCGCCAGCATGGGTAGCATCGGGGTGCCCCGCCTGCGCAGGGT
G
CTCCGGGCCCTGGCCTGGCTCTACCCAGAGATCGGCTACTGCCAGGGCACCGGCATGGTGGCCGCCTGC
CTC
CTGCTGTTCCTGGAGGAGGAGGACGCCTTCTGGATGATGTCTGCCATCATCGAGGACCTGCTCCCCG
CC
TCCTACTTCAGCACCACCCTGCTGGGTGTCCAGACTGACCAGCGGGTCCTGCGCCACCTCATTGTCCA
G
TACCTGCCTCGCCTGGACAAGCTGCTCCAGGAGCATGACATTGAGCTGTCCCTGATCACACTGCACTGG
TTC
CTCACGGCCTTCGCCAGCGTGGTGGACATCAAGCTGCTCCTGCGCATCTGGGACCTGTTTTTCTACG
AG
GGCTCCCGGGTGCTGTTCCAGCTCACGCTGGGCATGCTGCACCTCAAGGAGGAAGAGCTGATCCAGTC
A
GAGAACTCGGCCTCCATCTTCAACACGCTATCGGATATCCCGTCGCAGATGGAGGACGCGGAGCTGCTT
CTG
GGGGTGGCCATGCGGCTGGCCGGCTCCCTCACCGATGTGGCCGTGGAGACTCAGCGCCGCAAGCACC
TG
GCCTATCTCATTGCAGACCAGGGCCAGCTCCTGGGGGCCGGCACCCTCACCAACCTCTCTCAGGTTGT
T
CGCCGCAGGACCCAGCGGAGGAAGTCCACCATCACTGCTCTGCTCTTCGGGGAGGATGACCTGGAGGCA
CTC
AAGGCCAAGAACATCAAGCAGACGGAACTGGTGGCTGACCTCCGGGAAGCCATCCTGCGCGTGGCAC
GC
CACTTCCAGTGCACAGACCCCAAAAACTGCAGCGTGGAGCTGACTCCAGACTATAGCATGGAGAGCCA
C
CAGCGGGACCACGAGAACTACGTGGCGTGCTCACGCAGCCACCGGCGCCGAGCCAAGGCCCTGCTGGAC
TTT
GAGCGGCACGACGACGACGAGCTGGGCTTCCGCAAGAACGACATCATCACAATCGTGTCTCAGAAGG
AC
GAGCACTGCTGGGTGGGGGAGCTCAACGGCCTGCGAGGCTGGTTTCCAGCCAAGTTCGTGGAAGTCCT
G
GATGAGCGCAGCAAAGAGTACTCCATCGCGGGGGATGACTCGGTGACGGAGGGGGTCACAGACCTCGTG
CGA
GGGACCCTCTGCCCGGCCCTTAAGGCCCTGTTCGAACATGGACTGAAGAAGCCATCCCTGCTTGGGG
GC
GCCTGCCACCCCTGGCTGTTTATCGAGGAGGCTGCAGGCCGGGAGGTCGAGAGAGACTTTGCCTCCGT
G
TATTCCCGTCTGGTGCTCTGTAAGACCTTCAGGTTGGATGAAGATGGCAAAGTCCTGACCCCGGAGGAG
CTG
CTCTACCGGGCTGTGCAGTCTGTGAACGTGACCCACGATGCAGTGCATGCACAAATGGATGTGAAGC
TC
CGCTCACTGATCTGCGTGGGGCTCAATGAGCAGGTGCTGCACCTGTGGCTGGAGGTGCTCTGCTCCAG
C
CTGCCCACCGTGGAGAAGTGGTACCAGCCCTGGTCCTTCCTGCGCAGCCCGGGCTGGGTCCAGATCAAG
TGT
GAGCTCCGAGTCCTCTGCTGCTTTGCCTTCAGCCTCTCCCAGGACTGGGAGCTCCCTGCGAAGAGAG
AG
GCGCAGCAGCCCCTGAAGGAGGGCGTCCGGGACATGCTGGTGAAGCACCACCTCTTCAGCTGGGATGT
G
GACGGGTGA


Translation (749 aa):
MSGSHTPACGPFSALTPSIWPQEILAKYTQKEESAEQPEFYYDEFGFRVYKEEGDEPGSSLLANSPLMED
A
PQRLRWQAHLEFTHNHDVGDLTWDKIAVSLPRSEKLRSLVLAGIPHGMRPQ
LWMRLSGALQKKRNSELS
Y
REIVKNSSNDETIAAKQ
IEKDLLRTMPSNACFASMGSIGVPRLRRVLRALAWLYPEIGYCQGTGMVAAC
L
LLFLEEEDAFWMMSAIIEDLLPASYFSTTLLGVQTDQRVLRHLIVQYLPRLDKLLQEHDI
ELSLITLHW
F
LTAFASVVDIKLLLRIWDLFFYEGSRVLFQLTLGMLHLK
EEELIQSENSASIFNTLSDIPSQMEDAELL
L
GVAMRLAGSLTDVAVETQRRKHLAYLIADQGQLLGAGTLTNLSQ
VVRRRTQRRKSTITALLFGEDDLEA
L
KAKNIKQTELVADLREAILRVARHFQCTDPKNCSV
ELTPDYSMESHQRDHENYVACSRSHRRRAKALLD
F
ERHDDDELGFRKNDIIT
IVSQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSIAGDDSVTEGVTDLV
R
GTLCPALKALFEHGLKKPSLLGGACHPWLFIEE
AAGREVERDFASVYSRLVLCKTFRLDEDGKVLTPEE
L
LYR
AVQSVNVTHDAVHAQMDVKLRSLICVGLNEQVLHLWLEVLCSSLPTVEKWYQPWSFLRSPGWVQIK
C
EL
RVLCCFAFSLSQDWELPAKREAQQPLKEGVRDMLVKHHLFSWDVDG



Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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