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Report for CCDS54137.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54137.1 Public Homo sapiens 17 ARL17B 24 110 108 CCDS HistoryNCBI Gene:100506084Re-query CCDS DB by CCDS ID:54137.1Re-query CCDS DB by GeneID:100506084See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54137.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000434041.6 ENSP00000391751.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000434041.6Link to Ensembl Protein Viewer:ENSP00000391751.2Re-query CCDS DB by Nucleotide ID:ENST00000434041Re-query CCDS DB by Protein ID:ENSP00000391751
Original member Current member EBI ENST00000570618.5 ENSP00000459151.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000570618.5Link to Ensembl Protein Viewer:ENSP00000459151.1Re-query CCDS DB by Nucleotide ID:ENST00000570618Re-query CCDS DB by Protein ID:ENSP00000459151
Original member Current member EBI ENST00000656849.1 ENSP00000499587.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000656849.1Link to Ensembl Protein Viewer:ENSP00000499587.1Re-query CCDS DB by Nucleotide ID:ENST00000656849Re-query CCDS DB by Protein ID:ENSP00000499587
Original member Current member NCBI NM_001103154.2 NP_001096624.1 Accepted alive Link to Nucleotide Sequence:NM_001103154.2Link to Protein Sequence:NP_001096624.1Re-query CCDS DB by Nucleotide ID:NM_001103154Re-query CCDS DB by Protein ID:NP_001096624Link to BLAST:NP_001096624.1
Original member Current member NCBI NM_001352769.1 NP_001339698.1 Accepted alive Link to Nucleotide Sequence:NM_001352769.1Link to Protein Sequence:NP_001339698.1Re-query CCDS DB by Nucleotide ID:NM_001352769Re-query CCDS DB by Protein ID:NP_001339698Link to BLAST:NP_001339698.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001096624.1 125 Q8IVW1-2 125 100% 0 0
NP_001339698.1 125 Q8IVW1-2 125 100% 0 0

Chromosomal Locations for CCDS 54137.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46299547 46299665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46352820 46352930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46358250 46358397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (378 nt):
ATGGGAAACATTTTTGAAAAGCTCTTTAAAAGTCTACTTGGGAAAAAAAAGATGCGGATTCTTATATTGA
GTTTGGATACAGCTGGAAAAACCACCATCTTGTATAAATTGAAGCTGGGGGAGACTGTGCCTGCCGTCCC
TACAGTAGGTTTCTGTGTGGAGACAGTAGAATATAAAAATAACACCTTCGCTGTCTGGGATGTTGGCAGC
CACTTCAAAATCAGACCTCTGTGGCAGCATTTTTTCCAGAACACAAAAGAGCTATCAGCTTCCCAGTTTG
CACAATTCATCAAGAAATTATGCGGGGTCACTGGCACAAATGATGAGGCATCTCCTGGAAGCTTAACTTC
TTATCCATCCCATCTCTTGGACAGATGA

Translation (125 aa):
MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKNNTFAVWDVGS
HFKIRPLWQHFFQNTKELSASQFAQFIKKLCGVTGTNDEASPGSLTSYPSHLLDR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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